Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACFXAA_RS04030 Genome accession   NZ_CP170717
Coordinates   938030..938314 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   A7Z459
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 933030..943314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS04010 (ACFXAA_04010) ade 933136..934869 (-) 1734 WP_317859647.1 adenine deaminase -
  ACFXAA_RS04015 (ACFXAA_04015) ktrC 935018..935683 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  ACFXAA_RS04020 (ACFXAA_04020) - 935724..936551 (-) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  ACFXAA_RS04025 (ACFXAA_04025) - 936553..937857 (-) 1305 WP_007409646.1 ATP-binding protein -
  ACFXAA_RS04030 (ACFXAA_04030) abrB 938030..938314 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACFXAA_RS04035 (ACFXAA_04035) mreBH 938585..939592 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  ACFXAA_RS04040 (ACFXAA_04040) - 939664..939798 (+) 135 WP_003154559.1 protein YkpC -
  ACFXAA_RS04045 (ACFXAA_04045) - 939899..941131 (+) 1233 WP_007409644.1 aminopeptidase -
  ACFXAA_RS04050 (ACFXAA_04050) - 941163..942095 (-) 933 WP_060675401.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=944995 ACFXAA_RS04030 WP_003154557.1 938030..938314(-) (abrB) [Bacillus amyloliquefaciens strain JP5014]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=944995 ACFXAA_RS04030 WP_003154557.1 938030..938314(-) (abrB) [Bacillus amyloliquefaciens strain JP5014]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z459

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543