Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ACFXAA_RS03680 Genome accession   NZ_CP170717
Coordinates   827066..828088 (-) Length   340 a.a.
NCBI ID   WP_007409697.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 822066..833088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS03650 (ACFXAA_03650) - 822572..823453 (-) 882 WP_266138779.1 2-dehydropantoate 2-reductase -
  ACFXAA_RS03655 (ACFXAA_03655) - 823616..824098 (+) 483 WP_007611262.1 N-acetyltransferase -
  ACFXAA_RS03660 (ACFXAA_03660) gerR 824139..824714 (-) 576 WP_003154450.1 sporulation-specific transcriptional regulator GerR -
  ACFXAA_RS03665 (ACFXAA_03665) rpmF 824872..825051 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  ACFXAA_RS03670 (ACFXAA_03670) - 825073..825591 (-) 519 WP_007409699.1 DUF177 domain-containing protein -
  ACFXAA_RS03675 (ACFXAA_03675) - 825800..827047 (+) 1248 WP_015417417.1 nucleotidyltransferase -
  ACFXAA_RS03680 (ACFXAA_03680) sepM 827066..828088 (-) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator
  ACFXAA_RS03685 (ACFXAA_03685) - 828094..828873 (-) 780 WP_007409696.1 patatin family protein -
  ACFXAA_RS03690 (ACFXAA_03690) ylbJ 829053..830279 (+) 1227 WP_015417416.1 sporulation integral membrane protein YlbJ -
  ACFXAA_RS03695 (ACFXAA_03695) coaD 830298..830780 (-) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  ACFXAA_RS03700 (ACFXAA_03700) rsmD 830785..831339 (-) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACFXAA_RS03705 (ACFXAA_03705) - 831638..831910 (-) 273 WP_003154470.1 YlbG family protein -
  ACFXAA_RS03710 (ACFXAA_03710) ylbF 831969..832418 (-) 450 WP_003154472.1 YlbF family regulator Regulator
  ACFXAA_RS03715 (ACFXAA_03715) - 832489..832728 (-) 240 WP_003154475.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37448.99 Da        Isoelectric Point: 7.3837

>NTDB_id=944993 ACFXAA_RS03680 WP_007409697.1 827066..828088(-) (sepM) [Bacillus amyloliquefaciens strain JP5014]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYEEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=944993 ACFXAA_RS03680 WP_007409697.1 827066..828088(-) (sepM) [Bacillus amyloliquefaciens strain JP5014]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTGTTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGAAGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTAAAATACTCATTTAACGGCATTTATGCCAGTTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATTATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGTGTCGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTATAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGGACGGGGACAATCGACGTGGACGG
CAAAGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(127-193)

Peptidase family M50 (Peptidase_M50)

(99-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.953

100

0.394