Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACFXAA_RS02705 Genome accession   NZ_CP170717
Coordinates   623909..624340 (-) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 618909..629340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS02695 (ACFXAA_02695) hexA 620405..622990 (-) 2586 WP_033574833.1 DNA mismatch repair protein MutS Machinery gene
  ACFXAA_RS02700 (ACFXAA_02700) cotE 623109..623654 (-) 546 WP_003154111.1 outer spore coat protein CotE -
  ACFXAA_RS02705 (ACFXAA_02705) ymcA 623909..624340 (-) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  ACFXAA_RS02710 (ACFXAA_02710) miaB 624343..625872 (-) 1530 WP_015417500.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACFXAA_RS02715 (ACFXAA_02715) - 626015..627193 (-) 1179 WP_029325912.1 glycine C-acetyltransferase -
  ACFXAA_RS02720 (ACFXAA_02720) tdh 627206..628252 (-) 1047 WP_015417499.1 L-threonine 3-dehydrogenase -
  ACFXAA_RS02725 (ACFXAA_02725) spoVS 628510..628770 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=944981 ACFXAA_RS02705 WP_003154113.1 623909..624340(-) (ymcA) [Bacillus amyloliquefaciens strain JP5014]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=944981 ACFXAA_RS02705 WP_003154113.1 623909..624340(-) (ymcA) [Bacillus amyloliquefaciens strain JP5014]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTCTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACTCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAATAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916