Detailed information NTG0944967

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACFXAD_RS19145
• Genome accession: NZ_CP170653
• Coordinates: 3882071..3883192 (-)
• Length: 373 a.a.
• NCBI ID: WP_033575143.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5011
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3877071..3888192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAD_RS19125 (ACFXAD_19125)	-	3877519..3878214 (-)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-
ACFXAD_RS19130 (ACFXAD_19130)	-	3878269..3879228 (-)	960	WP_031378693.1	metal ABC transporter substrate-binding protein	-
ACFXAD_RS19135 (ACFXAD_19135)	-	3879413..3881092 (-)	1680	WP_039252865.1	alpha-glucosidase	-
ACFXAD_RS19140 (ACFXAD_19140)	-	3881176..3881955 (-)	780	WP_053573761.1	glucose 1-dehydrogenase	-
ACFXAD_RS19145 (ACFXAD_19145)	rapF	3882071..3883192 (-)	1122	WP_033575143.1	tetratricopeptide repeat protein	Regulator
ACFXAD_RS19150 (ACFXAD_19150)	-	3883302..3883805 (+)	504	WP_015416743.1	M15 family metallopeptidase	-
ACFXAD_RS19155 (ACFXAD_19155)	-	3883802..3885160 (-)	1359	WP_053573762.1	YcdB/YcdC domain-containing protein	-
ACFXAD_RS19160 (ACFXAD_19160)	-	3885361..3886761 (-)	1401	WP_015416741.1	YcdB/YcdC domain-containing protein	-
ACFXAD_RS19165 (ACFXAD_19165)	-	3886888..3887883 (+)	996	WP_015416740.1	DUF5105 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.49 Da
• Isoelectric Point: 5.0032

>NTDB_id=944967 ACFXAD_RS19145 WP_033575143.1 3882071..3883192(-) (rapF) [Bacillus amyloliquefaciens strain JP5011]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=944967 ACFXAD_RS19145 WP_033575143.1 3882071..3883192(-) (rapF) [Bacillus amyloliquefaciens strain JP5011]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGATTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402