Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACFXAD_RS18065 Genome accession   NZ_CP170653
Coordinates   3657658..3658836 (-) Length   392 a.a.
NCBI ID   WP_053573663.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3652658..3663836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS18035 (ACFXAD_18035) - 3652908..3654311 (-) 1404 WP_021495073.1 MFS transporter -
  ACFXAD_RS18040 (ACFXAD_18040) - 3654350..3654716 (-) 367 Protein_3501 BCCT family transporter -
  ACFXAD_RS18045 (ACFXAD_18045) - 3655423..3655541 (-) 119 Protein_3502 IS1595 family transposase -
  ACFXAD_RS18050 (ACFXAD_18050) - 3655498..3655626 (-) 129 WP_223204396.1 hypothetical protein -
  ACFXAD_RS18055 (ACFXAD_18055) - 3655583..3655738 (-) 156 Protein_3504 tetratricopeptide repeat protein -
  ACFXAD_RS18060 (ACFXAD_18060) - 3656200..3657477 (-) 1278 WP_053573662.1 hypothetical protein -
  ACFXAD_RS18065 (ACFXAD_18065) rapC 3657658..3658836 (-) 1179 WP_053573663.1 RapH N-terminal domain-containing protein Regulator
  ACFXAD_RS18070 (ACFXAD_18070) - 3658997..3659143 (-) 147 WP_108702392.1 NAD-dependent epimerase/dehydratase family protein -
  ACFXAD_RS18075 (ACFXAD_18075) - 3659152..3659793 (-) 642 WP_053573664.1 FMN-dependent NADH-azoreductase -
  ACFXAD_RS18080 (ACFXAD_18080) - 3659990..3660493 (+) 504 WP_004393007.1 Rrf2 family transcriptional regulator -
  ACFXAD_RS18085 (ACFXAD_18085) - 3660955..3661221 (+) 267 WP_199910799.1 TQO small subunit DoxD -
  ACFXAD_RS18090 (ACFXAD_18090) - 3661292..3661450 (-) 159 Protein_3511 hypothetical protein -
  ACFXAD_RS18095 (ACFXAD_18095) - 3662048..3662497 (+) 450 WP_053573666.1 hypothetical protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46618.90 Da        Isoelectric Point: 4.7518

>NTDB_id=944954 ACFXAD_RS18065 WP_053573663.1 3657658..3658836(-) (rapC) [Bacillus amyloliquefaciens strain JP5011]
MHRILLDENRKIPYDLVTQKLNDWYTLIKNDQVEQAEHIRKEVEKELVNLEENQDALLYYQLLEFRHEIMLSYMESKRID
DLNSAYETIKEMEEQGQLTGMLEYYFFFFTGMYEFRRKELTTAISAYRIAETKLSEVEDEIEKAEFFFKVSYVYYYMKQT
YFSMNYASRALKIFQKFDEYAVQTLRCQFIVAGNLIDSLEFERALQQFLNALEIAEYTKIPHLIGMSHMNIGICYEELKD
YNNASIHLGLSIDIFEKSKHSFLTKALFAMAHVYAKKHNFDIAYNYFIKGRSEAENRNDKEYIAKFKILEGLYFSNGEYE
LIDEAFSYLADRKMFADMENFATEIGDYFYGEGELELSNKFYRMSIEARRKIKRGEIINEDQPNSIGSNGVE

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=944954 ACFXAD_RS18065 WP_053573663.1 3657658..3658836(-) (rapC) [Bacillus amyloliquefaciens strain JP5011]
TTGCACCGGATTCTCTTGGATGAAAACAGAAAAATTCCGTACGACCTAGTCACTCAAAAATTGAATGATTGGTATACTCT
TATTAAAAATGATCAAGTTGAACAGGCTGAGCATATAAGAAAAGAAGTGGAAAAAGAATTAGTGAATCTGGAAGAAAATC
AAGACGCTTTGTTATACTATCAATTGCTTGAATTCCGACACGAGATAATGTTGAGTTATATGGAATCGAAAAGGATTGAT
GATTTAAATAGTGCGTATGAAACAATAAAAGAAATGGAAGAGCAAGGGCAATTAACGGGTATGCTTGAGTATTACTTTTT
CTTTTTTACAGGTATGTACGAGTTCAGACGTAAAGAATTAACAACGGCAATAAGTGCTTATAGGATTGCTGAAACAAAAC
TTTCTGAAGTGGAAGATGAAATAGAAAAAGCTGAGTTTTTTTTCAAAGTTTCATACGTTTATTATTATATGAAACAGACT
TACTTTTCGATGAATTATGCTAGTCGTGCTTTGAAAATATTTCAGAAGTTCGATGAATACGCTGTTCAAACATTGCGCTG
TCAGTTTATAGTAGCAGGAAATTTGATAGATTCTTTGGAATTTGAAAGAGCGTTGCAACAATTTTTGAATGCATTGGAAA
TTGCAGAGTACACCAAAATTCCTCATCTGATTGGTATGTCTCATATGAACATTGGGATTTGTTATGAAGAGTTAAAGGAT
TATAATAATGCTTCTATCCATTTGGGATTGTCGATAGATATTTTTGAAAAATCTAAACATAGTTTTTTGACAAAAGCTTT
GTTTGCTATGGCTCACGTATATGCCAAAAAACATAATTTTGATATAGCTTATAATTATTTCATTAAAGGACGAAGCGAAG
CAGAGAATAGGAATGATAAAGAATACATTGCAAAATTTAAAATTTTAGAAGGACTTTATTTTTCAAATGGTGAATATGAA
TTAATTGATGAAGCATTTTCTTACCTTGCTGACAGAAAAATGTTTGCTGACATGGAGAATTTTGCAACTGAAATAGGCGA
TTATTTTTATGGAGAAGGGGAATTAGAACTTTCAAACAAATTTTATCGTATGAGTATTGAAGCAAGACGAAAAATCAAAA
GAGGGGAGATTATTAATGAAGATCAGCCGAATTCTATTGGGAGTAATGGTGTTGAGTAG

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(11-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.666

96.173

0.362