Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   ACFXAD_RS15290 Genome accession   NZ_CP170653
Coordinates   3116749..3120141 (-) Length   1130 a.a.
NCBI ID   WP_053573546.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3111749..3125141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS15235 (ACFXAD_15235) - 3112304..3112468 (+) 165 WP_165458409.1 hypothetical protein -
  ACFXAD_RS15240 (ACFXAD_15240) - 3112469..3112825 (-) 357 WP_003155128.1 YisL family protein -
  ACFXAD_RS15245 (ACFXAD_15245) - 3112919..3113824 (-) 906 WP_007409162.1 fumarylacetoacetate hydrolase family protein -
  ACFXAD_RS15250 (ACFXAD_15250) - 3114042..3114257 (+) 216 WP_014417374.1 aspartyl-phosphate phosphatase Spo0E family protein -
  ACFXAD_RS15255 (ACFXAD_15255) - 3114447..3114668 (+) 222 WP_003155135.1 spore germination protein -
  ACFXAD_RS15260 (ACFXAD_15260) - 3114681..3114917 (+) 237 WP_007409164.1 spore germination protein GerPB -
  ACFXAD_RS15265 (ACFXAD_15265) - 3114953..3115570 (+) 618 WP_014417373.1 spore germination protein GerPC -
  ACFXAD_RS15270 (ACFXAD_15270) - 3115567..3115743 (+) 177 WP_003155141.1 hypothetical protein -
  ACFXAD_RS15275 (ACFXAD_15275) - 3115743..3116138 (+) 396 WP_014417372.1 spore germination protein GerPE -
  ACFXAD_RS15280 (ACFXAD_15280) - 3116178..3116396 (+) 219 WP_003155143.1 spore germination protein -
  ACFXAD_RS15285 (ACFXAD_15285) - 3116440..3116733 (-) 294 WP_053573547.1 hypothetical protein -
  ACFXAD_RS15290 (ACFXAD_15290) sbcC 3116749..3120141 (-) 3393 WP_053573546.1 exonuclease subunit SbcC Machinery gene
  ACFXAD_RS15295 (ACFXAD_15295) sbcD 3120138..3121310 (-) 1173 WP_025649562.1 exonuclease subunit SbcD -
  ACFXAD_RS15300 (ACFXAD_15300) addA 3121375..3125079 (-) 3705 WP_053573573.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128229.20 Da        Isoelectric Point: 5.5600

>NTDB_id=944936 ACFXAD_RS15290 WP_053573546.1 3116749..3120141(-) (sbcC) [Bacillus amyloliquefaciens strain JP5011]
MKPILLTIKGLHSFREEQTIDFAGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKDEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKQAEQQFHEANERLEAAEKKRVRAK
ERFENHQEIWNLQTERDEYERREKKLEERRPYITDLTERLKEAETALALEPYADRYTEAVRRKQRAEQEHELAKRKSEAE
TVSFTRQNEAYEAWRAHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEAEKTNAEHSKKEEEYEAASKQLAGVKDRLTRG
QNRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQITKERANLTTQLKNVEKLNGESESLTAKAKTEEEDITRAY
QTLQTVYHMVCETERSLKAAAERADKTQADLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRPRSAHETFSPDTA
VQEQLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQSARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVTRLISAHQQTVKQAEQLAERIRYEEKEADRLRHSLEELESLSESRLNQYNEVCGDIPPNRIDSWQASIDEKDR
QAEECEKRIETSIAFLKEHEEEKERLQEMKHRLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLEAVRQELQL
LKSKEQSLFDALKQAQQSLNDAKGRESGSLMSLRDAETSLEKAQNDWRVRSKDTGFTEPDQVKKSLLPQGRAEEMKKEID
EFLDTSKQLSANISRVTDKLADRRISEEEWTASVSLLKQAEAESGAAMEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTLEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=944936 ACFXAD_RS15290 WP_053573546.1 3116749..3120141(-) (sbcC) [Bacillus amyloliquefaciens strain JP5011]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGGGAGGAACAGACCATTGATTTTGCCGGACTGTCAGG
AGCCGGGGTGTTCGGGATTTTCGGGCCGACCGGAAGCGGAAAATCGTCGATCCTTGATGCCATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACACACGGAATCCTGAATCATGCCGAAGATCAGCTCGCCGTCTCATTTACATTC
GCGCTTCAATCCGGCCACCGGGTTTCCTACAAGGTCGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTAAAAACCGC
CCTCTGCCGCCTGATTGAAATCAAAGACGAACAAACGGTGCTGGCCGATAAAGCGAATGAAGTGAACAAAAAGGTAGAGG
AGCTTCTTGGCCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTGCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTT
AAAGGCGCGGAAAGAAGACATATGCTCCAGCGCCTGTTTAATCTGGAACAGTACGGGGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCAGCGAAAAAAAATGAAATGCTGGCCGAACAATCCGGCCTCGGAGACGCAGGAGAAGATG
CGCTGAAGCAGGCTGAACAGCAGTTTCACGAAGCGAACGAACGGCTTGAAGCAGCTGAGAAGAAACGGGTCCGGGCAAAA
GAGCGTTTTGAGAATCACCAGGAAATTTGGAACCTGCAGACAGAAAGAGATGAATATGAGCGCCGGGAGAAAAAGCTTGA
GGAAAGACGCCCGTACATCACGGATTTGACTGAGCGTCTTAAAGAGGCTGAAACAGCTCTCGCCCTTGAGCCGTACGCAG
ACCGCTACACAGAAGCCGTCCGCCGGAAGCAGCGCGCCGAACAGGAGCACGAACTGGCCAAACGGAAATCAGAGGCGGAA
ACCGTTTCATTTACCCGGCAAAATGAAGCCTATGAAGCATGGCGGGCCCATAAGGCCGAACAGGAGCCGAAGCTTGTCAA
GGAAGAAGAGCTGTATCAAAGACTTTCAGCCATAGAACAAAAACTGCTTGAAGCGAAAAAAGAAGCGGAAAAAACAAATG
CGGAACACAGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGGCCGGAGTGAAAGACCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAAGTGACCGCCGATGAACGGAAAAAATGCCAGACCGC
AGCACAGCTGGCGGCGGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAACGGGCCAATCTGACAACGCAGCTGAAAA
ACGTGGAGAAGCTGAACGGAGAAAGCGAGTCGCTCACAGCGAAAGCGAAAACGGAAGAGGAAGACATTACGCGCGCTTAT
CAAACGCTTCAAACCGTTTACCATATGGTCTGTGAAACGGAGCGTTCACTGAAAGCCGCAGCCGAACGGGCTGACAAAAC
GCAAGCCGATCTCCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTAATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCGACGCAGCATGACCGCCCTCGTTCCGCTCATGAAACATTCTCGCCTGATACAGCT
GTACAGGAACAGCTGCAGCAGGTTGAAGCACTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACAGCCAAGGT
TGCATTAGAAGAACAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAGCGCCCGGGTTCCGGAGCTGGAAGCCG
CTTCCTCCATCAGCGGACGCCCGCTTGATGAAGCGTTCAGCGCCGTCCGCTTGGAGTGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACAAGACTGATCAGCGCGCATCAGCAGACGGTGAAACAAGCTGAGCAGCTTGCCGAACG
AATCCGCTACGAGGAAAAAGAAGCCGACCGTCTCAGACATTCATTAGAAGAGCTTGAATCGCTGTCAGAAAGCCGATTGA
ATCAGTACAACGAAGTCTGCGGTGATATTCCGCCAAACCGGATTGACTCCTGGCAGGCTTCGATAGATGAGAAGGACAGG
CAGGCAGAAGAATGTGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGAGGAGAAAGAACGCCTGCA
GGAGATGAAGCATCGGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCGGAGCGCCTGCAGCAGGTGATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCAATTTCCGCAAAGCTTGAAGCGGTGCGGCAGGAATTACAGCTG
TTAAAATCGAAAGAGCAGTCCCTATTCGACGCGCTGAAGCAGGCGCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGGAGTCTCATGTCACTCAGGGATGCTGAGACCTCCCTTGAGAAAGCGCAAAACGACTGGCGCGTGAGGTCAAAAGACA
CCGGGTTTACCGAGCCGGACCAAGTCAAAAAAAGTCTGCTTCCGCAAGGGCGTGCAGAGGAAATGAAAAAAGAAATTGAT
GAGTTCCTGGACACCTCAAAACAGCTATCGGCAAATATCAGCCGTGTTACTGATAAATTAGCCGACCGCCGGATATCAGA
GGAAGAATGGACAGCATCCGTTTCTCTGCTGAAGCAGGCAGAGGCTGAGTCAGGCGCCGCCATGGAGGAAAAAGGAGCAC
AGGCAAAAGCCTTCGCGGTTATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAAGAACAGCTGGA
AAGCGTGGCTCGGGACGCCTCTGCCCGTCTCGGAGCGCTGACAAGGCAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GTTTCGTCATGCGTGATGATGCGAACGGAGGCGTCAAACGGCCCGTATCAAGCCTTTCCGGCGGGGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCCGCCCAGATTCAGCTGCGGGGGCAATACCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACTCTTGACCAAGGGCTCTTAGACACCGTTGTCACAGCGCTCGAAAAGCTGCAATCGGACAACTTATCCG
TCGGAGTGATCAGCCATGTGCAGGAGCTGAGAGCGCGTCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGG
AAAGGCACCCGGGTCACATTGGAGATCATGTAG

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)

AAA domain (AAA_23)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.581

100

0.649