Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ACFXAD_RS14920 Genome accession   NZ_CP170653
Coordinates   3050524..3051684 (-) Length   386 a.a.
NCBI ID   WP_053573556.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 3045524..3056684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS14895 (ACFXAD_14895) - 3045763..3046449 (+) 687 WP_022553553.1 lytic transglycosylase domain-containing protein -
  ACFXAD_RS14900 (ACFXAD_14900) - 3046678..3047076 (+) 399 WP_003155023.1 thiol management oxidoreductase -
  ACFXAD_RS14905 (ACFXAD_14905) spxH 3047073..3047975 (+) 903 WP_003155024.1 protease adaptor protein SpxH -
  ACFXAD_RS14910 (ACFXAD_14910) - 3048262..3048429 (+) 168 WP_003155026.1 hypothetical protein -
  ACFXAD_RS14915 (ACFXAD_14915) pepF 3048467..3050296 (-) 1830 WP_108702427.1 oligoendopeptidase F Regulator
  ACFXAD_RS14920 (ACFXAD_14920) coiA 3050524..3051684 (-) 1161 WP_053573556.1 competence protein CoiA family protein Machinery gene
  ACFXAD_RS14925 (ACFXAD_14925) mecA 3051835..3052491 (-) 657 WP_003155032.1 adaptor protein MecA Regulator
  ACFXAD_RS14930 (ACFXAD_14930) - 3052767..3053423 (+) 657 WP_007409109.1 TerC family protein -
  ACFXAD_RS14935 (ACFXAD_14935) spx 3053480..3053875 (-) 396 WP_003155034.1 transcriptional regulator Spx -
  ACFXAD_RS14940 (ACFXAD_14940) - 3054053..3054631 (-) 579 WP_007409110.1 GNAT family N-acetyltransferase -
  ACFXAD_RS14945 (ACFXAD_14945) - 3054749..3055936 (-) 1188 WP_040238278.1 putative glycoside hydrolase -

Sequence


Protein


Download         Length: 386 a.a.        Molecular weight: 44422.31 Da        Isoelectric Point: 10.1042

>NTDB_id=944928 ACFXAD_RS14920 WP_053573556.1 3050524..3051684(-) (coiA) [Bacillus amyloliquefaciens strain JP5011]
MFSAVTADGRLIQLAGSYSKEKAAELRKKRWFCPVCKSELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQGCSVSLEPYLTSAGQRPDLTAESGEERLAFEFQCANLSADSLKSRTAGLKNAGYRPVWIIGAKRLKRMAAQFFRL
SAFHWQFFEVHSFSSLLFYCPDARSFYRLHSITPFYTGYSYAGLITIPLHKANLKDICHPEGRHSVRLPSWGRAVAGFRN
KSGRFLSEDAGLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQGHLYLRLAELSKKGAPIRLSGMVHDLRQKI
RRKEIRMRYGSQDSLIGMAVKQYADFLCLQDFLREIENEVYMPSSQRKLPQTAEELRRRDLLFFGE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=944928 ACFXAD_RS14920 WP_053573556.1 3050524..3051684(-) (coiA) [Bacillus amyloliquefaciens strain JP5011]
ATGTTCAGTGCTGTGACTGCCGACGGACGGCTCATTCAGCTGGCCGGAAGCTATTCAAAGGAAAAAGCGGCGGAGCTGAG
AAAGAAACGCTGGTTCTGCCCCGTTTGCAAAAGTGAGCTTGATATCAAACTGGGACGGGAGAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGTCCAGGGGAATCCGAACCTGAAAGCGAATACCATCTGGAAGGAAAAAGGCAGCTTTTTCTC
TGGCTAAAGACACAAGGGTGCAGCGTCAGCCTGGAACCGTATCTGACTTCCGCTGGACAGCGGCCTGACTTGACGGCGGA
AAGCGGAGAAGAGAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCGGCGGACTCTTTAAAGAGCCGGACGGCAGGCC
TGAAAAACGCCGGGTACCGGCCGGTCTGGATCATCGGGGCAAAACGGTTAAAACGGATGGCCGCGCAATTTTTCCGGCTT
TCTGCTTTTCACTGGCAGTTCTTTGAAGTCCATTCATTTTCCTCCTTACTGTTTTACTGCCCCGACGCCCGCTCCTTTTA
CAGGCTGCATTCCATCACTCCGTTTTACACCGGCTATTCTTATGCCGGCTTAATTACAATCCCTCTTCACAAAGCAAACC
TGAAAGACATTTGTCATCCGGAAGGGCGGCACAGCGTCAGACTTCCCTCGTGGGGACGTGCCGTAGCCGGCTTCCGAAAC
AAAAGCGGGCGGTTTTTATCTGAAGATGCCGGTCTTATCCGGCGTCTTTTTTACGAAAGACATCAGGTTGCATTTCCATT
TCTCCCCTCTGAAGTGTTTATTCCTGTTTCAGCGGGCTTTGTGTTTGCAAGTCCCGTTTTTGTGTGGCAGGGCCATTTAT
ACTTACGGCTTGCGGAACTTTCTAAAAAAGGCGCACCGATCCGATTATCGGGCATGGTTCATGATTTGCGGCAAAAAATC
AGGCGTAAGGAGATTCGGATGCGGTATGGTTCACAAGATAGCCTTATCGGAATGGCGGTAAAACAATATGCTGATTTCTT
ATGCTTGCAGGATTTTTTAAGGGAAATTGAGAATGAAGTATATATGCCCTCATCTCAACGGAAGCTCCCTCAAACGGCAG
AAGAGCTGCGCCGGCGGGATCTGCTCTTTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

46.277

97.409

0.451