Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V8U11_RS10490 Genome accession   NZ_CP146886
Coordinates   2277396..2278031 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain ZH2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2272396..2283031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8U11_RS10470 (V8U11_10470) - 2272641..2273573 (+) 933 WP_081362295.1 ABC transporter ATP-binding protein -
  V8U11_RS10475 (V8U11_10475) - 2273570..2274349 (+) 780 WP_007931651.1 ABC transporter permease -
  V8U11_RS10480 (V8U11_10480) - 2274398..2274913 (-) 516 WP_038580916.1 DUF2062 domain-containing protein -
  V8U11_RS10485 (V8U11_10485) comA 2275062..2277293 (+) 2232 WP_338807207.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V8U11_RS10490 (V8U11_10490) exbB 2277396..2278031 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V8U11_RS10495 (V8U11_10495) - 2278028..2278456 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  V8U11_RS10500 (V8U11_10500) lpxK 2278456..2279466 (+) 1011 WP_338807208.1 tetraacyldisaccharide 4'-kinase -
  V8U11_RS10505 (V8U11_10505) - 2279490..2279675 (+) 186 WP_007931663.1 Trm112 family protein -
  V8U11_RS10510 (V8U11_10510) kdsB 2279672..2280436 (+) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V8U11_RS10515 (V8U11_10515) - 2280436..2280900 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  V8U11_RS10520 (V8U11_10520) murB 2280897..2281916 (+) 1020 WP_338807209.1 UDP-N-acetylmuramate dehydrogenase -
  V8U11_RS10525 (V8U11_10525) - 2282165..2282635 (+) 471 WP_038580901.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=944921 V8U11_RS10490 WP_007931657.1 2277396..2278031(+) (exbB) [Pseudomonas chlororaphis strain ZH2]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=944921 V8U11_RS10490 WP_007931657.1 2277396..2278031(+) (exbB) [Pseudomonas chlororaphis strain ZH2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867