Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACFXAD_RS13430 Genome accession   NZ_CP170653
Coordinates   2782043..2782327 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   A7Z459
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2777043..2787327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS13410 (ACFXAD_13410) ade 2777149..2778882 (-) 1734 WP_053573394.1 adenine deaminase -
  ACFXAD_RS13415 (ACFXAD_13415) ktrC 2779031..2779696 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  ACFXAD_RS13420 (ACFXAD_13420) - 2779737..2780564 (-) 828 WP_015417386.1 gamma-glutamylcyclotransferase -
  ACFXAD_RS13425 (ACFXAD_13425) - 2780566..2781870 (-) 1305 WP_007409646.1 ATP-binding protein -
  ACFXAD_RS13430 (ACFXAD_13430) abrB 2782043..2782327 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACFXAD_RS13435 (ACFXAD_13435) mreBH 2782598..2783605 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  ACFXAD_RS13440 (ACFXAD_13440) - 2783677..2783811 (+) 135 WP_003154559.1 protein YkpC -
  ACFXAD_RS13445 (ACFXAD_13445) - 2783912..2785144 (+) 1233 WP_007409644.1 aminopeptidase -
  ACFXAD_RS13450 (ACFXAD_13450) - 2785176..2786084 (-) 909 WP_015417384.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=944919 ACFXAD_RS13430 WP_003154557.1 2782043..2782327(-) (abrB) [Bacillus amyloliquefaciens strain JP5011]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=944919 ACFXAD_RS13430 WP_003154557.1 2782043..2782327(-) (abrB) [Bacillus amyloliquefaciens strain JP5011]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z459

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543