Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACFXAD_RS12125 Genome accession   NZ_CP170653
Coordinates   2473041..2473472 (-) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2468041..2478472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS12115 (ACFXAD_12115) hexA 2469537..2472122 (-) 2586 WP_053573448.1 DNA mismatch repair protein MutS Machinery gene
  ACFXAD_RS12120 (ACFXAD_12120) cotE 2472241..2472786 (-) 546 WP_003154111.1 outer spore coat protein CotE -
  ACFXAD_RS12125 (ACFXAD_12125) ymcA 2473041..2473472 (-) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  ACFXAD_RS12130 (ACFXAD_12130) miaB 2473475..2475004 (-) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACFXAD_RS12135 (ACFXAD_12135) - 2475147..2476325 (-) 1179 WP_029325912.1 glycine C-acetyltransferase -
  ACFXAD_RS12140 (ACFXAD_12140) tdh 2476338..2477384 (-) 1047 WP_039251466.1 L-threonine 3-dehydrogenase -
  ACFXAD_RS12145 (ACFXAD_12145) spoVS 2477642..2477902 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=944905 ACFXAD_RS12125 WP_003154113.1 2473041..2473472(-) (ymcA) [Bacillus amyloliquefaciens strain JP5011]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=944905 ACFXAD_RS12125 WP_003154113.1 2473041..2473472(-) (ymcA) [Bacillus amyloliquefaciens strain JP5011]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACTCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAATAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916