Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WAC57_RS14875 Genome accession   NZ_CP146878
Coordinates   3062500..3063096 (-) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain DS2766     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3057500..3068096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAC57_RS14845 - 3057569..3057964 (+) 396 WP_016363285.1 hypothetical protein -
  WAC57_RS14850 - 3058358..3058951 (+) 594 WP_016387278.1 TMEM175 family protein -
  WAC57_RS14855 - 3059024..3059218 (-) 195 WP_003568474.1 hypothetical protein -
  WAC57_RS14860 cydB 3059245..3060264 (-) 1020 WP_165846906.1 cytochrome d ubiquinol oxidase subunit II -
  WAC57_RS14865 - 3060257..3061735 (-) 1479 WP_165846905.1 cytochrome ubiquinol oxidase subunit I -
  WAC57_RS14870 rpsR 3062177..3062413 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  WAC57_RS14875 ssb 3062500..3063096 (-) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  WAC57_RS14880 rpsF 3063127..3063423 (-) 297 WP_003568460.1 30S ribosomal protein S6 -
  WAC57_RS14885 ssb 3063551..3063982 (-) 432 WP_003568458.1 single-stranded DNA-binding protein -
  WAC57_RS14890 deoC 3064165..3064869 (+) 705 WP_165846904.1 deoxyribose-phosphate aldolase -
  WAC57_RS14895 gyrA 3064974..3067595 (-) 2622 WP_003584054.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=944861 WAC57_RS14875 WP_003568462.1 3062500..3063096(-) (ssb) [Lacticaseibacillus paracasei strain DS2766]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=944861 WAC57_RS14875 WP_003568462.1 3062500..3063096(-) (ssb) [Lacticaseibacillus paracasei strain DS2766]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485