Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACFXAD_RS03095 Genome accession   NZ_CP170653
Coordinates   583203..584333 (+) Length   376 a.a.
NCBI ID   WP_053573977.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 578203..589333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS03070 (ACFXAD_03070) - 579160..579846 (+) 687 WP_053573976.1 VWA domain-containing protein -
  ACFXAD_RS03075 (ACFXAD_03075) - 580156..580836 (+) 681 WP_015240755.1 VWA domain-containing protein -
  ACFXAD_RS03080 (ACFXAD_03080) - 580922..581086 (+) 165 WP_007407587.1 hypothetical protein -
  ACFXAD_RS03085 (ACFXAD_03085) fdhD 581181..581969 (+) 789 WP_017418742.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACFXAD_RS03090 (ACFXAD_03090) moaA 581987..583012 (+) 1026 WP_014419094.1 GTP 3',8-cyclase MoaA -
  ACFXAD_RS03095 (ACFXAD_03095) rapC 583203..584333 (+) 1131 WP_053573977.1 tetratricopeptide repeat protein Regulator
  ACFXAD_RS03100 (ACFXAD_03100) - 584455..584934 (+) 480 WP_007407583.1 hypothetical protein -
  ACFXAD_RS03105 (ACFXAD_03105) - 585009..585197 (+) 189 WP_003151197.1 CsbD family protein -
  ACFXAD_RS03110 (ACFXAD_03110) ureA 585551..585868 (+) 318 WP_007407581.1 urease subunit gamma -
  ACFXAD_RS03115 (ACFXAD_03115) ureB 585865..586239 (+) 375 WP_053573978.1 urease subunit beta -
  ACFXAD_RS03120 (ACFXAD_03120) ureC 586236..587945 (+) 1710 WP_007407580.1 urease subunit alpha -
  ACFXAD_RS03125 (ACFXAD_03125) - 588087..588491 (+) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  ACFXAD_RS03130 (ACFXAD_03130) - 588529..588840 (+) 312 WP_223609733.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44948.05 Da        Isoelectric Point: 5.3221

>NTDB_id=944840 ACFXAD_RS03095 WP_053573977.1 583203..584333(+) (rapC) [Bacillus amyloliquefaciens strain JP5011]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGIMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=944840 ACFXAD_RS03095 WP_053573977.1 583203..584333(+) (rapC) [Bacillus amyloliquefaciens strain JP5011]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGTATATCAGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGAAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTACGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGATCATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCTCTCAATATGGATTTAATTCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399