Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ACFXAD_RS00670 Genome accession   NZ_CP170653
Coordinates   111333..111563 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 106333..116563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS00660 (ACFXAD_00660) spoVT 107057..107593 (-) 537 WP_004264646.1 stage V sporulation protein T -
  ACFXAD_RS00665 (ACFXAD_00665) mfd 107730..111263 (-) 3534 WP_053573821.1 transcription-repair coupling factor -
  ACFXAD_RS00670 (ACFXAD_00670) subA/fin 111333..111563 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  ACFXAD_RS00675 (ACFXAD_00675) pth 111625..112191 (-) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  ACFXAD_RS00680 (ACFXAD_00680) - 112276..112884 (-) 609 WP_014416724.1 50S ribosomal protein L25/general stress protein Ctc -
  ACFXAD_RS00685 (ACFXAD_00685) - 112969..113922 (-) 954 WP_007409928.1 ribose-phosphate diphosphokinase -
  ACFXAD_RS00690 (ACFXAD_00690) glmU 113944..115314 (-) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ACFXAD_RS00695 (ACFXAD_00695) spoVG 115506..115799 (-) 294 WP_004264660.1 septation regulator SpoVG -
  ACFXAD_RS00700 (ACFXAD_00700) ridA 115995..116375 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=944823 ACFXAD_RS00670 WP_004264650.1 111333..111563(-) (subA/fin) [Bacillus amyloliquefaciens strain JP5011]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=944823 ACFXAD_RS00670 WP_004264650.1 111333..111563(-) (subA/fin) [Bacillus amyloliquefaciens strain JP5011]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868