Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8608_RS07415 Genome accession   NZ_AP028398
Coordinates   1422104..1423072 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11511     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417104..1428072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8608_RS07390 (B11511_14810) cdsA 1418014..1418739 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  R8608_RS07395 (B11511_14820) - 1418748..1419086 (-) 339 WP_002852397.1 hypothetical protein -
  R8608_RS07400 (B11511_14830) - 1419088..1420395 (-) 1308 WP_002902413.1 NFACT RNA binding domain-containing protein -
  R8608_RS07405 (B11511_14840) mobA 1420457..1421032 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  R8608_RS07410 (B11511_14850) pldA 1421029..1422018 (+) 990 WP_002902416.1 phospholipase A -
  R8608_RS07415 (B11511_14860) ceuB 1422104..1423072 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  R8608_RS07420 (B11511_14870) ceuC 1423065..1424003 (+) 939 WP_002859639.1 iron chelate uptake ABC transporter family permease subunit -
  R8608_RS07425 (B11511_14880) ceuD 1424000..1424755 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  R8608_RS07430 (B11511_14890) ceuB 1424768..1425760 (+) 993 WP_002859640.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8608_RS07440 (B11511_14900) - 1425986..1426540 (-) 555 WP_002884169.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=94479 R8608_RS07415 WP_002874446.1 1422104..1423072(+) (ceuB) [Campylobacter jejuni strain BCH-11511]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=94479 R8608_RS07415 WP_002874446.1 1422104..1423072(+) (ceuB) [Campylobacter jejuni strain BCH-11511]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCGCTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment