Detailed information NTG0944788

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ACFW99_RS15665
• Genome accession: NZ_CP170651
• Coordinates: 3182258..3183388 (-)
• Length: 376 a.a.
• NCBI ID: WP_256683626.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5025
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3177258..3188388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFW99_RS15645 (ACFW99_15645)	-	3177359..3178210 (-)	852	WP_015418145.1	DUF72 domain-containing protein	-
ACFW99_RS15650 (ACFW99_15650)	-	3178237..3178590 (-)	354	WP_031378393.1	hypothetical protein	-
ACFW99_RS15655 (ACFW99_15655)	-	3178663..3180027 (-)	1365	WP_033574894.1	allantoinase	-
ACFW99_RS15660 (ACFW99_15660)	-	3180207..3181802 (+)	1596	WP_064107697.1	PucR family transcriptional regulator	-
ACFW99_RS15665 (ACFW99_15665)	rapC	3182258..3183388 (-)	1131	WP_256683626.1	Rap family tetratricopeptide repeat protein	Regulator
ACFW99_RS15670 (ACFW99_15670)	-	3183518..3183697 (-)	180	WP_007410112.1	hypothetical protein	-
ACFW99_RS15675 (ACFW99_15675)	-	3183823..3184956 (-)	1134	WP_061890802.1	hypothetical protein	-
ACFW99_RS15680 (ACFW99_15680)	-	3185013..3186209 (-)	1197	WP_015418151.1	tetracycline resistance MFS efflux pump	-
ACFW99_RS15685 (ACFW99_15685)	-	3186331..3187542 (-)	1212	WP_197985421.1	alanine--glyoxylate aminotransferase family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44281.55 Da
• Isoelectric Point: 6.0294

>NTDB_id=944788 ACFW99_RS15665 WP_256683626.1 3182258..3183388(-) (rapC) [Bacillus amyloliquefaciens strain JP5025]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVVSGNYVDFKSYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYNKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISTKGLSSAIFQGDKLFESLQKYLEALYINAIDQIGIKQT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=944788 ACFW99_RS15665 WP_256683626.1 3182258..3183388(-) (rapC) [Bacillus amyloliquefaciens strain JP5025]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTCGTATCAGG
GAACTATGTAGACTTTAAAAGTTATGAAAAAAGCTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAATAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCACAAAGGGACTTTCATCAGCGATATTTCAAGGAG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATAGGAATCAAACAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (194-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.063	100	0.444
rapF	Bacillus subtilis subsp. subtilis str. 168	40.369	100	0.407