Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACFW99_RS14460 Genome accession   NZ_CP170651
Coordinates   2956820..2957524 (-) Length   234 a.a.
NCBI ID   WP_031379302.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2951820..2962524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS14440 (ACFW99_14440) cysK 2951829..2952800 (+) 972 WP_020954278.1 cysteine synthase A -
  ACFW99_RS14445 (ACFW99_14445) pepV 2952838..2954229 (-) 1392 WP_039254172.1 dipeptidase PepV -
  ACFW99_RS14450 (ACFW99_14450) - 2954325..2955629 (+) 1305 WP_014418668.1 NCS2 family permease -
  ACFW99_RS14455 (ACFW99_14455) - 2955663..2956823 (-) 1161 WP_031379301.1 ABC transporter permease -
  ACFW99_RS14460 (ACFW99_14460) pptA 2956820..2957524 (-) 705 WP_031379302.1 ABC transporter ATP-binding protein Regulator
  ACFW99_RS14465 (ACFW99_14465) - 2957805..2958026 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ACFW99_RS14470 (ACFW99_14470) - 2958154..2958873 (-) 720 WP_007408795.1 pseudouridine synthase -
  ACFW99_RS14475 (ACFW99_14475) - 2958930..2960567 (-) 1638 WP_003152313.1 polysaccharide biosynthesis protein -
  ACFW99_RS14480 (ACFW99_14480) - 2960775..2962040 (+) 1266 WP_007408798.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25717.39 Da        Isoelectric Point: 4.4290

>NTDB_id=944782 ACFW99_RS14460 WP_031379302.1 2956820..2957524(-) (pptA) [Bacillus amyloliquefaciens strain JP5025]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEIAGLIGANGAGKSTVIKAVLGLSRDIEGGIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGMEGEECRERAGRLLEEFSLTSVTHDLPSGFSKGMQQKLMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=944782 ACFW99_RS14460 WP_031379302.1 2956820..2957524(-) (pptA) [Bacillus amyloliquefaciens strain JP5025]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCTGATGTATCTCTGTC
AGTCAATGCGGGTGAAATTGCCGGTTTAATCGGAGCGAACGGCGCGGGGAAAAGTACAGTGATAAAGGCGGTTCTCGGGC
TGTCCCGGGATATAGAAGGCGGTATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGTCCGAGTTTTTATGAT
GAACTGACGCTTTGGGAGCATCTCGAGCTGACCGGGTCATTGCGGGGCATGGAAGGGGAAGAGTGCCGTGAACGGGCAGG
GCGGCTGCTTGAAGAGTTTTCGCTGACGTCTGTAACACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAAT
TGATGCTTATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGGATTTTGATGTGCACTCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACGTTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45

100

0.462
  pptA Streptococcus thermophilus LMD-9

44.167

100

0.453