Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ACFW99_RS07795 Genome accession   NZ_CP170651
Coordinates   1545001..1546023 (+) Length   340 a.a.
NCBI ID   WP_007409697.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540001..1551023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS07760 (ACFW99_07760) - 1540361..1540600 (+) 240 WP_003154475.1 YlbE-like family protein -
  ACFW99_RS07765 (ACFW99_07765) ylbF 1540671..1541120 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  ACFW99_RS07770 (ACFW99_07770) - 1541179..1541451 (+) 273 WP_003154470.1 YlbG family protein -
  ACFW99_RS07775 (ACFW99_07775) rsmD 1541750..1542304 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACFW99_RS07780 (ACFW99_07780) coaD 1542309..1542791 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  ACFW99_RS07785 (ACFW99_07785) ylbJ 1542810..1544036 (-) 1227 WP_015417416.1 sporulation integral membrane protein YlbJ -
  ACFW99_RS07790 (ACFW99_07790) - 1544216..1544995 (+) 780 WP_007409696.1 patatin family protein -
  ACFW99_RS07795 (ACFW99_07795) sepM 1545001..1546023 (+) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator
  ACFW99_RS07800 (ACFW99_07800) - 1546042..1547289 (-) 1248 WP_015417417.1 nucleotidyltransferase -
  ACFW99_RS07805 (ACFW99_07805) - 1547498..1548016 (+) 519 WP_007409699.1 DUF177 domain-containing protein -
  ACFW99_RS07810 (ACFW99_07810) rpmF 1548038..1548217 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  ACFW99_RS07815 (ACFW99_07815) gerR 1548375..1548950 (+) 576 WP_003154450.1 sporulation-specific transcriptional regulator GerR -
  ACFW99_RS07820 (ACFW99_07820) - 1548991..1549473 (-) 483 WP_156240334.1 N-acetyltransferase -
  ACFW99_RS07825 (ACFW99_07825) - 1549636..1550517 (+) 882 WP_053104352.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37448.99 Da        Isoelectric Point: 7.3837

>NTDB_id=944728 ACFW99_RS07795 WP_007409697.1 1545001..1546023(+) (sepM) [Bacillus amyloliquefaciens strain JP5025]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYEEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=944728 ACFW99_RS07795 WP_007409697.1 1545001..1546023(+) (sepM) [Bacillus amyloliquefaciens strain JP5025]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTGTTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGAAGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTAAAATACTCATTTAACGGCATTTATGCCAGTTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATTATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGTGTCGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTATAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGGACGGGGACAATCGACGTGGACGG
CAAAGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(127-193)

Peptidase family M50 (Peptidase_M50)

(99-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.953

100

0.394