Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ACFW99_RS06385 Genome accession   NZ_CP170651
Coordinates   1240397..1241068 (+) Length   223 a.a.
NCBI ID   WP_060561818.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235397..1246068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS06370 (ACFW99_06370) - 1236203..1237201 (+) 999 WP_061861392.1 LacI family DNA-binding transcriptional regulator -
  ACFW99_RS06375 (ACFW99_06375) - 1237277..1238722 (+) 1446 WP_061861393.1 tagaturonate reductase -
  ACFW99_RS06380 (ACFW99_06380) - 1238719..1240212 (+) 1494 WP_060675172.1 UxaA family hydrolase -
  ACFW99_RS06385 (ACFW99_06385) scnR 1240397..1241068 (+) 672 WP_060561818.1 response regulator transcription factor Regulator
  ACFW99_RS06390 (ACFW99_06390) - 1241065..1242423 (+) 1359 WP_060675173.1 HAMP domain-containing sensor histidine kinase -
  ACFW99_RS06395 (ACFW99_06395) - 1242543..1242725 (+) 183 Protein_1205 ATP-binding cassette domain-containing protein -
  ACFW99_RS06400 (ACFW99_06400) - 1242885..1243076 (+) 192 WP_015417277.1 hypothetical protein -
  ACFW99_RS06410 (ACFW99_06410) - 1244438..1245202 (-) 765 WP_007610763.1 sulfite exporter TauE/SafE family protein -
  ACFW99_RS06415 (ACFW99_06415) - 1245347..1245814 (-) 468 WP_015417279.1 DinB family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26440.72 Da        Isoelectric Point: 6.5038

>NTDB_id=944718 ACFW99_RS06385 WP_060561818.1 1240397..1241068(+) (scnR) [Bacillus amyloliquefaciens strain JP5025]
MNNILYIEDDQEIGQFVKDDLEDRGYMMIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide


Download         Length: 672 bp        

>NTDB_id=944718 ACFW99_RS06385 WP_060561818.1 1240397..1241068(+) (scnR) [Bacillus amyloliquefaciens strain JP5025]
ATGAATAACATTTTATACATTGAAGATGATCAAGAAATTGGACAATTTGTAAAGGATGACTTAGAAGATCGGGGCTATAT
GATGATCTGGCTCACTTCTTCGTATAATTACGAAACATATATAGAAAAGGCAGATCTGATCGTGCTTGATATTATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCCAGA
ACGGGTCTGGAAGATAAGCTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAGCCCTTTCATCCCGATGAACTGGC
TGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTTCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAACAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCCGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACAA
TCAGGGGGATTGGATACAGGATCAAACAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36

100

0.363