Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACFW99_RS02100 Genome accession   NZ_CP170651
Coordinates   445478..445912 (+) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 440478..450912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS02070 (ACFW99_02070) - 441149..442009 (+) 861 WP_031378666.1 SDR family oxidoreductase -
  ACFW99_RS02075 (ACFW99_02075) - 442022..442525 (+) 504 WP_031378665.1 D-lyxose/D-mannose family sugar isomerase -
  ACFW99_RS02080 (ACFW99_02080) - 442613..443236 (+) 624 WP_077392012.1 GNAT family N-acetyltransferase -
  ACFW99_RS02085 (ACFW99_02085) - 443243..443665 (+) 423 WP_095352390.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACFW99_RS02090 (ACFW99_02090) - 444165..444974 (+) 810 WP_047935239.1 lipid II flippase Amj family protein -
  ACFW99_RS02095 (ACFW99_02095) - 445012..445302 (-) 291 WP_007410179.1 DUF3817 domain-containing protein -
  ACFW99_RS02100 (ACFW99_02100) lrpC 445478..445912 (+) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  ACFW99_RS02105 (ACFW99_02105) - 445976..448162 (+) 2187 WP_061861510.1 DNA topoisomerase III -
  ACFW99_RS02110 (ACFW99_02110) - 448397..449482 (+) 1086 WP_033575067.1 hypothetical protein -
  ACFW99_RS02115 (ACFW99_02115) - 449463..450311 (+) 849 WP_033575066.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=944690 ACFW99_RS02100 WP_007410180.1 445478..445912(+) (lrpC) [Bacillus amyloliquefaciens strain JP5025]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=944690 ACFW99_RS02100 WP_007410180.1 445478..445912(+) (lrpC) [Bacillus amyloliquefaciens strain JP5025]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGGAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792