Detailed information NTG0944678

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACFW99_RS01390
• Genome accession: NZ_CP170651
• Coordinates: 279400..280521 (+)
• Length: 373 a.a.
• NCBI ID: WP_014416837.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5025
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 274400..285521

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFW99_RS01370 (ACFW99_01370)	-	274713..275708 (-)	996	WP_061890410.1	DUF5105 domain-containing protein	-
ACFW99_RS01375 (ACFW99_01375)	-	275831..277231 (+)	1401	WP_317859677.1	YcdB/YcdC domain-containing protein	-
ACFW99_RS01380 (ACFW99_01380)	-	277432..278790 (+)	1359	WP_033575141.1	YcdB/YcdC domain-containing protein	-
ACFW99_RS01385 (ACFW99_01385)	-	278787..279290 (-)	504	WP_021495286.1	M15 family metallopeptidase	-
ACFW99_RS01390 (ACFW99_01390)	rapF	279400..280521 (+)	1122	WP_014416837.1	tetratricopeptide repeat protein	Regulator
ACFW99_RS01395 (ACFW99_01395)	-	280637..281416 (+)	780	WP_317859669.1	glucose 1-dehydrogenase	-
ACFW99_RS01400 (ACFW99_01400)	-	281500..283179 (+)	1680	WP_077392024.1	alpha-glucosidase	-
ACFW99_RS01405 (ACFW99_01405)	-	283365..284324 (+)	960	WP_128574958.1	metal ABC transporter substrate-binding protein	-
ACFW99_RS01410 (ACFW99_01410)	-	284379..285074 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44299.50 Da
• Isoelectric Point: 5.0806

>NTDB_id=944678 ACFW99_RS01390 WP_014416837.1 279400..280521(+) (rapF) [Bacillus amyloliquefaciens strain JP5025]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQFELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYLTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=944678 ACFW99_RS01390 WP_014416837.1 279400..280521(+) (rapF) [Bacillus amyloliquefaciens strain JP5025]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATTTGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAACTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTTTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCAGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCCGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAATGGGAAG
ATGAGATCTATCTGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.857	99.464	0.426
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402