Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACFW99_RS00095 Genome accession   NZ_CP170651
Coordinates   14548..14838 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 9548..19838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS00055 (ACFW99_00055) darA 9565..9894 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  ACFW99_RS00060 (ACFW99_00060) - 9907..10347 (+) 441 WP_004264730.1 YaaR family protein -
  ACFW99_RS00065 (ACFW99_00065) holB 10359..11348 (+) 990 WP_031379324.1 DNA polymerase III subunit delta' -
  ACFW99_RS00070 (ACFW99_00070) yaaT 11351..12178 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT Regulator
  ACFW99_RS00075 (ACFW99_00075) yabA 12193..12552 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  ACFW99_RS00080 (ACFW99_00080) - 12613..13356 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACFW99_RS00085 (ACFW99_00085) - 13343..13642 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  ACFW99_RS00090 (ACFW99_00090) rsmI 13617..14498 (+) 882 WP_061890392.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACFW99_RS00095 (ACFW99_00095) abrB 14548..14838 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  ACFW99_RS00100 (ACFW99_00100) metG 15322..17313 (+) 1992 WP_011996169.1 methionine--tRNA ligase -
  ACFW99_RS00105 (ACFW99_00105) - 17390..18157 (+) 768 WP_017419495.1 TatD family hydrolase -
  ACFW99_RS00110 (ACFW99_00110) - 18403..19617 (+) 1215 WP_031379322.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=944671 ACFW99_RS00095 WP_169510469.1 14548..14838(-) (abrB) [Bacillus amyloliquefaciens strain JP5025]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=944671 ACFW99_RS00095 WP_169510469.1 14548..14838(-) (abrB) [Bacillus amyloliquefaciens strain JP5025]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979