Detailed information NTG0944665

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: WAC51_RS16095
• Genome accession: NZ_CP146845
• Coordinates: 3508497..3509870 (+)
• Length: 457 a.a.
• NCBI ID: WP_217014088.1
• Uniprot ID: A0AAP5C609
• Organism: Stenotrophomonas geniculata strain WXY53
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3503497..3514870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WAC51_RS16080 (WAC51_16080)	sucD	3504352..3505227 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
WAC51_RS16085 (WAC51_16085)	sucC	3505248..3506417 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
WAC51_RS16090 (WAC51_16090)	-	3506823..3508436 (+)	1614	WP_338712876.1	ATP-binding protein	-
WAC51_RS16095 (WAC51_16095)	pilR	3508497..3509870 (+)	1374	WP_217014088.1	sigma-54 dependent transcriptional regulator	Regulator
WAC51_RS16100 (WAC51_16100)	pilB	3510001..3511728 (-)	1728	WP_338712877.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WAC51_RS16105 (WAC51_16105)	-	3511742..3514798 (-)	3057	WP_338712878.1	fused MFS/spermidine synthase	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49549.85 Da
• Isoelectric Point: 6.5844

>NTDB_id=944665 WAC51_RS16095 WP_217014088.1 3508497..3509870(+) (pilR) [Stenotrophomonas geniculata strain WXY53]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPAPGPATEQAARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPNEEPVDVRILSATHRDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAHYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRAPGGAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=944665 WAC51_RS16095 WP_217014088.1 3508497..3509870(+) (pilR) [Stenotrophomonas geniculata strain WXY53]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAAGCACGCGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTTCCGGATGGCAACGGCATTGAGCTGGTCAGCGAAATCGCCCAGCACTACCCGCGCACGCCAGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGTGGCCTGGTCAAGCACGCGCTGGAGCTCAACAACACCGAACGCCCTGCGCCCGGCCCCGCCA
CCGAACAGGCTGCACGCCTGCTGGGCGCTTCGCCGGCCATGGACGTGTTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCCGGGGTTGGCAAGGAACTGGTCGCTCGCACCATCCACGCCCAGGGCGCGCG
TGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTTGGCCACCGCA
AAGGCAGCTTCAGCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAAGCCGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAACTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTCGGTGCGCC
CAACGAAGAGCCGGTGGACGTGCGCATTCTCTCGGCCACGCACCGTGACCTGGCCGAACTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAGCTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAA
CTGGCAGCCGCCGTACTGGCGCGGCTGGCCCGCAGCCACGGCCGTGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAAGC
GCTGGCTCACTATGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATTCTGGAACGCGCGCTGGCACTGGCCGAAGAAG
ACCGCATCGGTGCCGACGACCTGCGCCTGCCCCAGCACGCCCCACGTGCGCCCGGTGGCGCAGCTCCCGCCGAAGCCGTG
GCCGACCTGCAGCCCGGCAGTGCCGCCCTGCCCTCGTACATCGAGCAGCTGGAACGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGGACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGAATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.281	99.781	0.621
pilR	Acinetobacter baumannii strain A118	47.732	100	0.484