Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8608_RS06070 Genome accession   NZ_AP028398
Coordinates   1149643..1150191 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11511     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1144643..1155191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8608_RS06035 (B11511_12090) - 1144834..1145259 (+) 426 WP_002859154.1 GNAT family N-acetyltransferase -
  R8608_RS06040 (B11511_12100) - 1145323..1145942 (+) 620 Protein_1177 NAD(P)H-dependent oxidoreductase -
  R8608_RS06045 (B11511_12110) - 1145942..1146547 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  R8608_RS06050 (B11511_12120) pgsA 1146672..1147208 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8608_RS06055 (B11511_12130) rseP 1147205..1148311 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  R8608_RS06060 (B11511_12140) - 1148304..1149170 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  R8608_RS06065 (B11511_12150) rpsF 1149257..1149634 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8608_RS06070 (B11511_12160) ssb 1149643..1150191 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  R8608_RS06075 (B11511_12170) rpsR 1150202..1150462 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8608_RS06080 (B11511_12180) lon 1150522..1152897 (-) 2376 WP_002901106.1 endopeptidase La -
  R8608_RS06085 (B11511_12190) - 1152914..1153561 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R8608_RS06090 (B11511_12200) fliW 1153722..1154111 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8608_RS06095 (B11511_12210) proC 1154111..1154842 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  R8608_RS06100 (B11511_12220) ctsT 1154839..1155141 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=94464 R8608_RS06070 WP_002854048.1 1149643..1150191(+) (ssb) [Campylobacter jejuni strain BCH-11511]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=94464 R8608_RS06070 WP_002854048.1 1149643..1150191(+) (ssb) [Campylobacter jejuni strain BCH-11511]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGTGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39

Multiple sequence alignment