Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V9W58_RS09370 Genome accession   NZ_CP146764
Coordinates   1902560..1902994 (+) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain AP202     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1897560..1907994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W58_RS09365 (V9W58_09365) - 1901060..1902271 (-) 1212 WP_012117600.1 cytochrome P450 -
  V9W58_RS09370 (V9W58_09370) nucA/comI 1902560..1902994 (+) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V9W58_RS09375 (V9W58_09375) - 1903054..1903809 (+) 756 WP_060561664.1 YoaK family protein -
  V9W58_RS09380 (V9W58_09380) - 1903843..1904205 (-) 363 WP_007410383.1 hypothetical protein -
  V9W58_RS09385 (V9W58_09385) - 1904399..1905727 (-) 1329 WP_251248442.1 S8 family peptidase -
  V9W58_RS09390 (V9W58_09390) - 1905906..1906139 (+) 234 WP_015239897.1 hypothetical protein -
  V9W58_RS09395 (V9W58_09395) - 1906395..1907102 (+) 708 WP_012117604.1 poly-gamma-glutamate hydrolase family protein -
  V9W58_RS09400 (V9W58_09400) - 1907162..1907614 (+) 453 WP_012117605.1 OsmC family protein -
  V9W58_RS09405 (V9W58_09405) - 1907628..1907981 (-) 354 WP_007410379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=944581 V9W58_RS09370 WP_007611576.1 1902560..1902994(+) (nucA/comI) [Bacillus velezensis strain AP202]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=944581 V9W58_RS09370 WP_007611576.1 1902560..1902994(+) (nucA/comI) [Bacillus velezensis strain AP202]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTGCAGTTCGGCCTTACAGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAAAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486