Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8608_RS03455 Genome accession   NZ_AP028398
Coordinates   638754..639137 (+) Length   127 a.a.
NCBI ID   WP_002918422.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11511     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 633754..644137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8608_RS03435 (B11511_06860) - 633833..635767 (-) 1935 WP_002852122.1 RNB domain-containing ribonuclease -
  R8608_RS03440 (B11511_06870) ilvC 635886..636908 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  R8608_RS03445 (B11511_06880) - 636912..637994 (+) 1083 WP_004310465.1 divergent polysaccharide deacetylase family protein -
  R8608_RS03450 (B11511_06890) dprA 637984..638757 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  R8608_RS03455 (B11511_06900) dprB 638754..639137 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX Machinery gene
  R8608_RS03460 (B11511_06910) - 639166..640005 (+) 840 WP_079264558.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8608_RS03465 (B11511_06920) msrA 640180..640677 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8608_RS03470 (B11511_06930) ppa 640719..641237 (-) 519 WP_002852138.1 inorganic diphosphatase -
  R8608_RS03475 (B11511_06940) adk 641247..641825 (-) 579 WP_002859580.1 adenylate kinase -
  R8608_RS03480 (B11511_06950) aspS 641822..643573 (-) 1752 WP_004310470.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14188.71 Da        Isoelectric Point: 9.0848

>NTDB_id=94457 R8608_RS03455 WP_002918422.1 638754..639137(+) (dprB) [Campylobacter jejuni strain BCH-11511]
MRALALDIGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=94457 R8608_RS03455 WP_002918422.1 638754..639137(+) (dprB) [Campylobacter jejuni strain BCH-11511]
ATGAGAGCTTTGGCTTTAGATATAGGTTTAAAACGCATAGGTGTAGCACTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment