Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   V9W62_RS15245 Genome accession   NZ_CP146763
Coordinates   3145429..3145569 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain AP81     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3140429..3150569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W62_RS15220 (V9W62_15220) - 3140756..3141139 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  V9W62_RS15225 (V9W62_15225) comA 3141161..3141805 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  V9W62_RS15230 (V9W62_15230) comP 3141886..3144192 (-) 2307 WP_015240483.1 sensor histidine kinase Regulator
  V9W62_RS15235 (V9W62_15235) comX 3144211..3144387 (-) 177 WP_015240484.1 competence pheromone ComX -
  V9W62_RS15240 (V9W62_15240) - 3144402..3145277 (-) 876 WP_025285191.1 polyprenyl synthetase family protein -
  V9W62_RS15245 (V9W62_15245) degQ 3145429..3145569 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  V9W62_RS15250 (V9W62_15250) - 3146034..3146375 (+) 342 WP_043020756.1 hypothetical protein -
  V9W62_RS15255 (V9W62_15255) - 3146382..3147605 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  V9W62_RS15260 (V9W62_15260) - 3147735..3149201 (-) 1467 WP_020954301.1 nicotinate phosphoribosyltransferase -
  V9W62_RS15265 (V9W62_15265) - 3149219..3149770 (-) 552 WP_003152033.1 isochorismatase family cysteine hydrolase -
  V9W62_RS15270 (V9W62_15270) - 3149867..3150265 (-) 399 WP_015240486.1 DUF1694 domain-containing protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=944529 V9W62_RS15245 WP_003152043.1 3145429..3145569(-) (degQ) [Bacillus velezensis strain AP81]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=944529 V9W62_RS15245 WP_003152043.1 3145429..3145569(-) (degQ) [Bacillus velezensis strain AP81]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891