Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V9W62_RS12460 Genome accession   NZ_CP146763
Coordinates   2624313..2625080 (-) Length   255 a.a.
NCBI ID   WP_043021627.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP81     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2619313..2630080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W62_RS12440 (V9W62_12440) - 2619515..2620327 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  V9W62_RS12445 (V9W62_12445) ccpN 2620353..2620991 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  V9W62_RS12450 (V9W62_12450) glyS 2621092..2623131 (-) 2040 WP_043021626.1 glycine--tRNA ligase subunit beta -
  V9W62_RS12455 (V9W62_12455) glyQ 2623124..2624011 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  V9W62_RS12460 (V9W62_12460) recO 2624313..2625080 (-) 768 WP_043021627.1 DNA repair protein RecO Machinery gene
  V9W62_RS12465 (V9W62_12465) - 2625117..2625260 (-) 144 WP_007408286.1 YqzL family protein -
  V9W62_RS12470 (V9W62_12470) era 2625416..2626321 (-) 906 WP_007408285.1 GTPase Era -
  V9W62_RS12475 (V9W62_12475) - 2626302..2626712 (-) 411 WP_003152976.1 cytidine deaminase -
  V9W62_RS12480 (V9W62_12480) - 2626836..2627210 (-) 375 WP_043021628.1 diacylglycerol kinase family protein -
  V9W62_RS12485 (V9W62_12485) ybeY 2627191..2627664 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  V9W62_RS12490 (V9W62_12490) - 2627665..2629797 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29308.96 Da        Isoelectric Point: 8.5625

>NTDB_id=944516 V9W62_RS12460 WP_043021627.1 2624313..2625080(-) (recO) [Bacillus velezensis strain AP81]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISLQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=944516 V9W62_RS12460 WP_043021627.1 2624313..2625080(-) (recO) [Bacillus velezensis strain AP81]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TATACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCTGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.627

100

0.886