Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   V9W62_RS07025 Genome accession   NZ_CP146763
Coordinates   1413064..1413660 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP81     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408064..1418660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W62_RS06995 (V9W62_06995) - 1408277..1408732 (+) 456 WP_007409622.1 flavodoxin -
  V9W62_RS07000 (V9W62_07000) dapD 1408814..1409524 (+) 711 WP_043021219.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  V9W62_RS07005 (V9W62_07005) - 1409595..1410719 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  V9W62_RS07010 (V9W62_07010) - 1410780..1411025 (+) 246 WP_003154596.1 YkuS family protein -
  V9W62_RS07015 (V9W62_07015) - 1411059..1411865 (-) 807 WP_038463800.1 mechanosensitive ion channel family protein -
  V9W62_RS07020 (V9W62_07020) - 1412153..1412611 (+) 459 WP_038463805.1 TlpA disulfide reductase family protein -
  V9W62_RS07025 (V9W62_07025) rok 1413064..1413660 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  V9W62_RS07030 (V9W62_07030) - 1413684..1414676 (-) 993 WP_043021218.1 hypothetical protein -
  V9W62_RS07035 (V9W62_07035) - 1414822..1415424 (+) 603 WP_025284661.1 molybdenum cofactor guanylyltransferase -
  V9W62_RS07040 (V9W62_07040) - 1415476..1416495 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  V9W62_RS07045 (V9W62_07045) glp 1416513..1417805 (+) 1293 WP_043021217.1 gephyrin-like molybdotransferase Glp -
  V9W62_RS07050 (V9W62_07050) mobB 1417766..1418287 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=944499 V9W62_RS07025 WP_012117447.1 1413064..1413660(+) (rok) [Bacillus velezensis strain AP81]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=944499 V9W62_RS07025 WP_012117447.1 1413064..1413660(+) (rok) [Bacillus velezensis strain AP81]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTTCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843