Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V9W62_RS01775 Genome accession   NZ_CP146763
Coordinates   330302..330739 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP81     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 325302..335739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W62_RS01750 (V9W62_01750) - 326328..327464 (+) 1137 WP_043021483.1 zinc-dependent alcohol dehydrogenase -
  V9W62_RS01755 (V9W62_01755) - 327479..327913 (+) 435 WP_012116767.1 RDD family protein -
  V9W62_RS01760 (V9W62_01760) - 327986..328309 (+) 324 Protein_306 YckD family protein -
  V9W62_RS01765 (V9W62_01765) - 328413..329825 (+) 1413 Protein_307 family 1 glycosylhydrolase -
  V9W62_RS01770 (V9W62_01770) nin/comJ 329883..330281 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  V9W62_RS01775 (V9W62_01775) nucA/comI 330302..330739 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V9W62_RS01780 (V9W62_01780) hxlB 331098..331655 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  V9W62_RS01785 (V9W62_01785) hxlA 331652..332287 (-) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  V9W62_RS01790 (V9W62_01790) - 332519..332881 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=944476 V9W62_RS01775 WP_003156588.1 330302..330739(-) (nucA/comI) [Bacillus velezensis strain AP81]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=944476 V9W62_RS01775 WP_003156588.1 330302..330739(-) (nucA/comI) [Bacillus velezensis strain AP81]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACAAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641