Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V9W59_RS11970 Genome accession   NZ_CP146762
Coordinates   2373904..2374674 (-) Length   256 a.a.
NCBI ID   WP_044332056.1    Uniprot ID   A0A5C0WLP6
Organism   Bacillus safensis strain JJ1041     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2368904..2379674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W59_RS11950 (V9W59_11950) - 2368996..2369817 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  V9W59_RS11955 (V9W59_11955) - 2369843..2370481 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  V9W59_RS11960 (V9W59_11960) glyS 2370649..2372694 (-) 2046 WP_149126466.1 glycine--tRNA ligase subunit beta -
  V9W59_RS11965 (V9W59_11965) glyQ 2372687..2373574 (-) 888 WP_073206339.1 glycine--tRNA ligase subunit alpha -
  V9W59_RS11970 (V9W59_11970) recO 2373904..2374674 (-) 771 WP_044332056.1 DNA repair protein RecO Machinery gene
  V9W59_RS11975 (V9W59_11975) - 2374710..2374853 (-) 144 WP_003217288.1 YqzL family protein -
  V9W59_RS11980 (V9W59_11980) era 2375002..2375907 (-) 906 WP_007501305.1 GTPase Era -
  V9W59_RS11985 (V9W59_11985) - 2375900..2376298 (-) 399 WP_008356263.1 cytidine deaminase -
  V9W59_RS11990 (V9W59_11990) - 2376412..2376798 (-) 387 WP_024423020.1 diacylglycerol kinase family protein -
  V9W59_RS11995 (V9W59_11995) ybeY 2376776..2377255 (-) 480 WP_024423021.1 rRNA maturation RNase YbeY -
  V9W59_RS12000 (V9W59_12000) - 2377256..2379343 (-) 2088 WP_172881095.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29337.98 Da        Isoelectric Point: 8.1204

>NTDB_id=944446 V9W59_RS11970 WP_044332056.1 2373904..2374674(-) (recO) [Bacillus safensis strain JJ1041]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELMDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=944446 V9W59_RS11970 WP_044332056.1 2373904..2374674(-) (recO) [Bacillus safensis strain JJ1041]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGCGTGATGGCCAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGACC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTAATGGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTACTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WLP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754