Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V9W59_RS08960 Genome accession   NZ_CP146762
Coordinates   1806387..1806767 (+) Length   126 a.a.
NCBI ID   WP_065214465.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1041     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1801387..1811767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W59_RS08950 (V9W59_08950) - 1801884..1805027 (+) 3144 WP_149126620.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  V9W59_RS08955 (V9W59_08955) - 1805221..1806129 (+) 909 WP_024425124.1 trypsin-like serine protease -
  V9W59_RS08960 (V9W59_08960) nucA/comI 1806387..1806767 (+) 381 WP_065214465.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V9W59_RS08965 (V9W59_08965) - 1806913..1807761 (+) 849 WP_024427077.1 STAS domain-containing protein -
  V9W59_RS08970 (V9W59_08970) - 1807794..1808336 (-) 543 WP_024425127.1 IseA DL-endopeptidase inhibitor family protein -
  V9W59_RS08975 (V9W59_08975) - 1808633..1809079 (+) 447 WP_149126619.1 hypothetical protein -
  V9W59_RS08980 (V9W59_08980) lexA 1809125..1809745 (-) 621 WP_024425129.1 transcriptional repressor LexA -
  V9W59_RS08985 (V9W59_08985) yneA 1809904..1810215 (+) 312 WP_024425130.1 cell division suppressor protein YneA -
  V9W59_RS08990 (V9W59_08990) - 1810233..1810880 (+) 648 WP_025093247.1 recombinase family protein -
  V9W59_RS08995 (V9W59_08995) - 1810950..1811180 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13833.49 Da        Isoelectric Point: 7.9051

>NTDB_id=944439 V9W59_RS08960 WP_065214465.1 1806387..1806767(+) (nucA/comI) [Bacillus safensis strain JJ1041]
MGTLFGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISEFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=944439 V9W59_RS08960 WP_065214465.1 1806387..1806767(+) (nucA/comI) [Bacillus safensis strain JJ1041]
ATGGGCACGTTGTTTGGCGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCA
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGGGCAGGCTCATG
GGTCGGGCATCAAATCAGCGAGTTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548