Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   V9W59_RS05295 Genome accession   NZ_CP146762
Coordinates   1094860..1095438 (+) Length   192 a.a.
NCBI ID   WP_024425481.1    Uniprot ID   A0A1L6ZJL9
Organism   Bacillus safensis strain JJ1041     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089860..1100438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W59_RS05275 (V9W59_05275) - 1090355..1091650 (-) 1296 WP_133744023.1 globin-coupled sensor protein -
  V9W59_RS05280 (V9W59_05280) - 1091743..1093275 (-) 1533 WP_149125798.1 FAD-dependent oxidoreductase -
  V9W59_RS05285 (V9W59_05285) - 1093417..1094277 (+) 861 WP_197202935.1 SDR family oxidoreductase -
  V9W59_RS05290 (V9W59_05290) - 1094334..1094570 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  V9W59_RS05295 (V9W59_05295) comK 1094860..1095438 (+) 579 WP_024425481.1 competence protein ComK Regulator
  V9W59_RS05300 (V9W59_05300) - 1095738..1096220 (+) 483 WP_024425482.1 hypothetical protein -
  V9W59_RS05305 (V9W59_05305) - 1096251..1097690 (-) 1440 WP_149125797.1 PLP-dependent aminotransferase family protein -
  V9W59_RS05310 (V9W59_05310) - 1097836..1099005 (+) 1170 WP_024425484.1 MFS transporter -
  V9W59_RS05315 (V9W59_05315) - 1099071..1099349 (+) 279 WP_171464240.1 barstar family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22350.37 Da        Isoelectric Point: 8.7996

>NTDB_id=944420 V9W59_RS05295 WP_024425481.1 1094860..1095438(+) (comK) [Bacillus safensis strain JJ1041]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=944420 V9W59_RS05295 WP_024425481.1 1094860..1095438(+) (comK) [Bacillus safensis strain JJ1041]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCAGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGC
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAATAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L6ZJL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62