Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ACFIOS_RS06020 Genome accession   NZ_CP170436
Coordinates   1255051..1256202 (+) Length   383 a.a.
NCBI ID   WP_000020365.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1510     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1250051..1261202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOS_RS05995 yfmH 1250880..1252166 (+) 1287 WP_000664766.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACFIOS_RS06000 ymfI 1252166..1252870 (+) 705 WP_000646222.1 elongation factor P 5-aminopentanone reductase -
  ACFIOS_RS06005 - 1252975..1253802 (+) 828 WP_000214890.1 YmfK family protein -
  ACFIOS_RS06010 - 1253821..1254213 (+) 393 WP_000859445.1 helix-turn-helix domain-containing protein -
  ACFIOS_RS06015 pgsA 1254247..1254825 (+) 579 WP_001025090.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFIOS_RS06020 cinA 1255051..1256202 (+) 1152 WP_000020365.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ACFIOS_RS06025 recA 1256367..1257410 (+) 1044 WP_000368166.1 recombinase RecA -
  ACFIOS_RS06030 rny 1257764..1259323 (+) 1560 WP_001050913.1 ribonuclease Y -
  ACFIOS_RS06035 - 1259621..1259836 (-) 216 WP_000026308.1 hypothetical protein -
  ACFIOS_RS06040 - 1260010..1260807 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43189.55 Da        Isoelectric Point: 6.4455

>NTDB_id=944406 ACFIOS_RS06020 WP_000020365.1 1255051..1256202(+) (cinA) [Staphylococcus aureus strain t1510]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQVMTPNNKQQALVIEGSTVLANHHGMAPGMIVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LYRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=944406 ACFIOS_RS06020 WP_000020365.1 1255051..1256202(+) (cinA) [Staphylococcus aureus strain t1510]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGTAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATAGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTTATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAACAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACTACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433