Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   V9W61_RS14865 Genome accession   NZ_CP146761
Coordinates   2876908..2877048 (-) Length   46 a.a.
NCBI ID   WP_003213123.1    Uniprot ID   A0A5K1N966
Organism   Bacillus altitudinis strain JJ1138     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2871908..2882048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS14840 (V9W61_14840) - 2872230..2872619 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  V9W61_RS14845 (V9W61_14845) comA 2872643..2873284 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  V9W61_RS14850 (V9W61_14850) comP 2873365..2875671 (-) 2307 WP_073412603.1 ATP-binding protein Regulator
  V9W61_RS14855 (V9W61_14855) comX 2875685..2875855 (-) 171 WP_017358941.1 competence pheromone ComX -
  V9W61_RS14860 (V9W61_14860) - 2875833..2876756 (-) 924 WP_008345863.1 polyprenyl synthetase family protein -
  V9W61_RS14865 (V9W61_14865) degQ 2876908..2877048 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  V9W61_RS14870 (V9W61_14870) - 2877554..2877907 (+) 354 WP_017367963.1 hypothetical protein -
  V9W61_RS14875 (V9W61_14875) - 2877944..2879170 (-) 1227 WP_035701209.1 HDOD domain-containing protein -
  V9W61_RS14880 (V9W61_14880) - 2879311..2880780 (-) 1470 WP_007500472.1 nicotinate phosphoribosyltransferase -
  V9W61_RS14885 (V9W61_14885) - 2880798..2881349 (-) 552 WP_025207909.1 isochorismatase family cysteine hydrolase -
  V9W61_RS14890 (V9W61_14890) - 2881410..2881817 (-) 408 WP_335352619.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5677.42 Da        Isoelectric Point: 4.6828

>NTDB_id=944396 V9W61_RS14865 WP_003213123.1 2876908..2877048(-) (degQ) [Bacillus altitudinis strain JJ1138]
MEKYEIEELKQLLWKLENEIRETTASLHNINKSIDQYDKYEYVKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=944396 V9W61_RS14865 WP_003213123.1 2876908..2877048(-) (degQ) [Bacillus altitudinis strain JJ1138]
ATGGAAAAGTATGAAATCGAAGAACTTAAACAACTATTATGGAAACTTGAAAACGAAATTAGAGAAACAACGGCTTCTCT
TCATAACATTAACAAAAGCATTGATCAATACGACAAATATGAATATGTGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N966

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.696