Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   V9W61_RS10240 Genome accession   NZ_CP146761
Coordinates   2033409..2034044 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain JJ1138     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2028409..2039044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS10205 (V9W61_10205) - 2029534..2030040 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  V9W61_RS10210 (V9W61_10210) - 2030209..2030628 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  V9W61_RS10215 (V9W61_10215) - 2030857..2031309 (-) 453 WP_017359729.1 YppG family protein -
  V9W61_RS10220 (V9W61_10220) - 2031418..2031798 (-) 381 WP_301231523.1 YppE family protein -
  V9W61_RS10225 (V9W61_10225) - 2031848..2032081 (-) 234 WP_224558417.1 DUF5446 family protein -
  V9W61_RS10230 (V9W61_10230) sspM 2032278..2032382 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  V9W61_RS10235 (V9W61_10235) - 2032406..2033362 (-) 957 WP_335352728.1 DUF2515 domain-containing protein -
  V9W61_RS10240 (V9W61_10240) recU 2033409..2034044 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  V9W61_RS10245 (V9W61_10245) - 2034064..2036736 (+) 2673 WP_338705538.1 PBP1A family penicillin-binding protein -
  V9W61_RS10250 (V9W61_10250) - 2036772..2037281 (-) 510 WP_335352858.1 YpoC family protein -
  V9W61_RS10255 (V9W61_10255) nth 2037278..2037940 (-) 663 WP_008344602.1 endonuclease III -
  V9W61_RS10260 (V9W61_10260) - 2037958..2038662 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=944379 V9W61_RS10240 WP_017359733.1 2033409..2034044(+) (recU) [Bacillus altitudinis strain JJ1138]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=944379 V9W61_RS10240 WP_017359733.1 2033409..2034044(+) (recU) [Bacillus altitudinis strain JJ1138]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697