Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V9W61_RS08855 Genome accession   NZ_CP146761
Coordinates   1763320..1763700 (+) Length   126 a.a.
NCBI ID   WP_326111975.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ1138     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1758320..1768700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS08845 (V9W61_08845) - 1760043..1760951 (+) 909 WP_338706317.1 trypsin-like serine protease -
  V9W61_RS08850 (V9W61_08850) - 1761098..1763092 (+) 1995 WP_326111871.1 glycosyltransferase family 39 protein -
  V9W61_RS08855 (V9W61_08855) nucA/comI 1763320..1763700 (+) 381 WP_326111975.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V9W61_RS08860 (V9W61_08860) - 1763845..1764693 (+) 849 WP_017359585.1 STAS domain-containing protein -
  V9W61_RS08865 (V9W61_08865) - 1764726..1765268 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  V9W61_RS08870 (V9W61_08870) - 1765565..1766008 (+) 444 WP_144678736.1 hypothetical protein -
  V9W61_RS08875 (V9W61_08875) lexA 1766056..1766676 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  V9W61_RS08880 (V9W61_08880) yneA 1766836..1767147 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  V9W61_RS08885 (V9W61_08885) - 1767165..1767812 (+) 648 WP_017359583.1 recombinase family protein -
  V9W61_RS08890 (V9W61_08890) - 1767882..1768112 (+) 231 WP_061419189.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13816.42 Da        Isoelectric Point: 7.3217

>NTDB_id=944378 V9W61_RS08855 WP_326111975.1 1763320..1763700(+) (nucA/comI) [Bacillus altitudinis strain JJ1138]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPDFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=944378 V9W61_RS08855 WP_326111975.1 1763320..1763700(+) (nucA/comI) [Bacillus altitudinis strain JJ1138]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGATTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCAAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548