Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   V9W61_RS05185 Genome accession   NZ_CP146761
Coordinates   1039100..1039678 (+) Length   192 a.a.
NCBI ID   WP_046526639.1    Uniprot ID   A0A9X0FWV9
Organism   Bacillus altitudinis strain JJ1138     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1034100..1044678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS05165 (V9W61_05165) - 1034593..1035888 (-) 1296 WP_007497200.1 globin-coupled sensor protein -
  V9W61_RS05170 (V9W61_05170) - 1035980..1037512 (-) 1533 WP_338706080.1 FAD-dependent oxidoreductase -
  V9W61_RS05175 (V9W61_05175) - 1037655..1038515 (+) 861 WP_017360297.1 SDR family oxidoreductase -
  V9W61_RS05180 (V9W61_05180) - 1038574..1038810 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  V9W61_RS05185 (V9W61_05185) comK 1039100..1039678 (+) 579 WP_046526639.1 competence protein ComK Regulator
  V9W61_RS05190 (V9W61_05190) - 1039822..1040928 (+) 1107 WP_338706082.1 D-TA family PLP-dependent enzyme -
  V9W61_RS05195 (V9W61_05195) - 1041314..1041796 (+) 483 WP_008348662.1 hypothetical protein -
  V9W61_RS05200 (V9W61_05200) - 1041827..1043266 (-) 1440 WP_251210852.1 PLP-dependent aminotransferase family protein -
  V9W61_RS05205 (V9W61_05205) - 1043409..1044578 (+) 1170 WP_251210851.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22376.41 Da        Isoelectric Point: 8.8031

>NTDB_id=944358 V9W61_RS05185 WP_046526639.1 1039100..1039678(+) (comK) [Bacillus altitudinis strain JJ1138]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSRVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=944358 V9W61_RS05185 WP_046526639.1 1039100..1039678(+) (comK) [Bacillus altitudinis strain JJ1138]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAGAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609