Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V9W61_RS01935 Genome accession   NZ_CP146761
Coordinates   364325..364753 (-) Length   142 a.a.
NCBI ID   WP_056702998.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ1138     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 359325..369753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS01905 (V9W61_01905) - 359470..359799 (+) 330 WP_017366586.1 YckD family protein -
  V9W61_RS01910 (V9W61_01910) - 359846..360610 (-) 765 WP_335352484.1 MBL fold metallo-hydrolase -
  V9W61_RS01915 (V9W61_01915) - 360726..361145 (+) 420 WP_024718958.1 Lrp/AsnC family transcriptional regulator -
  V9W61_RS01920 (V9W61_01920) - 361170..361976 (+) 807 WP_024718957.1 AAC(3) family N-acetyltransferase -
  V9W61_RS01925 (V9W61_01925) comJ 361978..362364 (-) 387 WP_039166300.1 competence protein ComJ -
  V9W61_RS01930 (V9W61_01930) - 362501..364198 (-) 1698 WP_327859531.1 methyl-accepting chemotaxis protein -
  V9W61_RS01935 (V9W61_01935) nucA/comI 364325..364753 (-) 429 WP_056702998.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V9W61_RS01940 (V9W61_01940) - 365122..367191 (+) 2070 WP_335352483.1 hydantoinase/oxoprolinase family protein -
  V9W61_RS01945 (V9W61_01945) - 367181..369166 (+) 1986 WP_335352482.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15961.90 Da        Isoelectric Point: 5.9940

>NTDB_id=944352 V9W61_RS01935 WP_056702998.1 364325..364753(-) (nucA/comI) [Bacillus altitudinis strain JJ1138]
MKLLKTILLLLLIVIGVATGYVQLEQNKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=944352 V9W61_RS01935 WP_056702998.1 364325..364753(-) (nucA/comI) [Bacillus altitudinis strain JJ1138]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTGTAGCAACAGGCTATGTCCAACTAGAGCAAAA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGTTATCCAGAAACTGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.345

83.803

0.514