Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V9W63_RS14665 Genome accession   NZ_CP146760
Coordinates   3009454..3010098 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain JJ334     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3004454..3015098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W63_RS14630 (V9W63_14630) - 3005639..3006070 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  V9W63_RS14635 (V9W63_14635) - 3006070..3006411 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  V9W63_RS14640 (V9W63_14640) - 3006404..3007885 (+) 1482 WP_338683738.1 Na+/H+ antiporter subunit D -
  V9W63_RS14645 (V9W63_14645) - 3007891..3008367 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  V9W63_RS14650 (V9W63_14650) - 3008367..3008651 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  V9W63_RS14655 (V9W63_14655) mnhG 3008635..3009009 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  V9W63_RS14660 (V9W63_14660) - 3009049..3009432 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  V9W63_RS14665 (V9W63_14665) comA 3009454..3010098 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  V9W63_RS14670 (V9W63_14670) comP 3010179..3012485 (-) 2307 WP_136803669.1 sensor histidine kinase Regulator
  V9W63_RS14675 (V9W63_14675) comX 3012504..3012680 (-) 177 WP_015240484.1 competence pheromone ComX -
  V9W63_RS14680 (V9W63_14680) - 3012695..3013570 (-) 876 WP_025285191.1 polyprenyl synthetase family protein -
  V9W63_RS14685 (V9W63_14685) degQ 3013722..3013862 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  V9W63_RS14690 (V9W63_14690) - 3014328..3014669 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=944330 V9W63_RS14665 WP_003152052.1 3009454..3010098(-) (comA) [Bacillus velezensis strain JJ334]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=944330 V9W63_RS14665 WP_003152052.1 3009454..3010098(-) (comA) [Bacillus velezensis strain JJ334]
ATGAAAAAGATACTAGTGATTGATGATCATCCAGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864