Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8952_RS07080 Genome accession   NZ_AP028396
Coordinates   1384139..1385107 (+) Length   322 a.a.
NCBI ID   WP_002882700.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11505     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1379139..1390107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8952_RS07055 (B11505_13940) cdsA 1380049..1380774 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  R8952_RS07060 (B11505_13950) - 1380783..1381121 (-) 339 WP_002852397.1 hypothetical protein -
  R8952_RS07065 (B11505_13960) - 1381123..1382430 (-) 1308 WP_317654045.1 NFACT family protein -
  R8952_RS07070 (B11505_13970) mobA 1382492..1383067 (+) 576 WP_002884175.1 molybdenum cofactor guanylyltransferase -
  R8952_RS07075 (B11505_13980) pldA 1383064..1384053 (+) 990 WP_002860788.1 phospholipase A -
  R8952_RS07080 (B11505_13990) ceuB 1384139..1385107 (+) 969 WP_002882700.1 ABC transporter permease Machinery gene
  R8952_RS07085 (B11505_14000) ceuC 1385100..1386038 (+) 939 WP_002884174.1 iron chelate uptake ABC transporter family permease subunit -
  R8952_RS07090 (B11505_14010) ceuD 1386035..1386790 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  R8952_RS07095 (B11505_14020) ceuB 1386803..1387795 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8952_RS07105 (B11505_14030) - 1388021..1388575 (-) 555 WP_002936331.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35441.35 Da        Isoelectric Point: 9.6678

>NTDB_id=94433 R8952_RS07080 WP_002882700.1 1384139..1385107(+) (ceuB) [Campylobacter jejuni strain BCH-11505]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKA
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=94433 R8952_RS07080 WP_002882700.1 1384139..1385107(+) (ceuB) [Campylobacter jejuni strain BCH-11505]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGCT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment