Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   V9W63_RS12820 Genome accession   NZ_CP146760
Coordinates   2641208..2641960 (-) Length   250 a.a.
NCBI ID   WP_020956151.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ334     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2636208..2646960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W63_RS12795 (V9W63_12795) mreC 2636644..2637507 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  V9W63_RS12800 (V9W63_12800) mreB 2637538..2638551 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  V9W63_RS12805 (V9W63_12805) radC 2638643..2639338 (-) 696 WP_007408165.1 DNA repair protein RadC -
  V9W63_RS12810 (V9W63_12810) - 2639370..2639939 (-) 570 WP_007408164.1 Maf family protein -
  V9W63_RS12815 (V9W63_12815) - 2640080..2641081 (-) 1002 WP_237436574.1 SPOR domain-containing protein -
  V9W63_RS12820 (V9W63_12820) comC 2641208..2641960 (-) 753 WP_020956151.1 A24 family peptidase Machinery gene
  V9W63_RS12825 (V9W63_12825) - 2642100..2643392 (-) 1293 WP_237436575.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  V9W63_RS12830 (V9W63_12830) - 2643451..2646093 (-) 2643 WP_237436576.1 valine--tRNA ligase -
  V9W63_RS12835 (V9W63_12835) - 2646546..2646737 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27129.84 Da        Isoelectric Point: 9.5938

>NTDB_id=944325 V9W63_RS12820 WP_020956151.1 2641208..2641960(-) (comC) [Bacillus velezensis strain JJ334]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLGSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=944325 V9W63_RS12820 WP_020956151.1 2641208..2641960(-) (comC) [Bacillus velezensis strain JJ334]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
TTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCTTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGTTGGGTTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584