Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACFIOK_RS04920 Genome accession   NZ_CP170434
Coordinates   930201..930941 (+) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t315     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 925201..935941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOK_RS04895 yhaM 925619..926560 (+) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -
  ACFIOK_RS04900 - 926681..927643 (-) 963 WP_000782127.1 foldase protein PrsA -
  ACFIOK_RS04905 - 927848..928405 (-) 558 WP_000477957.1 DUF3267 domain-containing protein -
  ACFIOK_RS04910 - 929138..929503 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  ACFIOK_RS04915 - 929645..930067 (-) 423 WP_000004981.1 HIT family protein -
  ACFIOK_RS04920 pptA 930201..930941 (+) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  ACFIOK_RS04925 ecsB 930934..932157 (+) 1224 WP_000551839.1 ABC transporter permease EcsB -
  ACFIOK_RS04930 traP 932281..932784 (-) 504 WP_000737978.1 signal transduction protein TRAP -
  ACFIOK_RS04935 - 932947..933057 (+) 111 WP_001790154.1 hypothetical protein -
  ACFIOK_RS04940 hemE 933047..934084 (+) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  ACFIOK_RS04945 hemH 934142..935065 (+) 924 WP_000162872.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=944303 ACFIOK_RS04920 WP_000216874.1 930201..930941(+) (pptA) [Staphylococcus aureus strain t315]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=944303 ACFIOK_RS04920 WP_000216874.1 930201..930941(+) (pptA) [Staphylococcus aureus strain t315]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545