Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V9W63_RS08180 Genome accession   NZ_CP146760
Coordinates   1615655..1616554 (+) Length   299 a.a.
NCBI ID   WP_106080024.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ334     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1610655..1621554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W63_RS08160 (V9W63_08160) - 1611345..1613048 (+) 1704 WP_144464367.1 glycosyl transferase -
  V9W63_RS08165 (V9W63_08165) - 1613045..1613326 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  V9W63_RS08170 (V9W63_08170) sucC 1613501..1614658 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  V9W63_RS08175 (V9W63_08175) sucD 1614687..1615589 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  V9W63_RS08180 (V9W63_08180) dprA 1615655..1616554 (+) 900 WP_106080024.1 DNA-processing protein DprA Machinery gene
  V9W63_RS08185 (V9W63_08185) topA 1616736..1618811 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  V9W63_RS08190 (V9W63_08190) trmFO 1618876..1620183 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V9W63_RS08195 (V9W63_08195) xerC 1620253..1621170 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32824.00 Da        Isoelectric Point: 8.1570

>NTDB_id=944303 V9W63_RS08180 WP_106080024.1 1615655..1616554(+) (dprA) [Bacillus velezensis strain JJ334]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKNSELDEVLSDYRREGITVI
PISSSLYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWIIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=944303 V9W63_RS08180 WP_106080024.1 1615655..1616554(+) (dprA) [Bacillus velezensis strain JJ334]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCTCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGAATTCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCTCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGATCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

42.424

88.294

0.375