Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V9W63_RS01800 Genome accession   NZ_CP146760
Coordinates   334842..335279 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ334     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 329842..340279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W63_RS01775 (V9W63_01775) - 330862..331998 (+) 1137 WP_237436806.1 zinc-dependent alcohol dehydrogenase -
  V9W63_RS01780 (V9W63_01780) - 332013..332447 (+) 435 WP_007409358.1 RDD family protein -
  V9W63_RS01785 (V9W63_01785) - 332519..332842 (+) 324 WP_007409357.1 YckD family protein -
  V9W63_RS01790 (V9W63_01790) - 332946..334382 (+) 1437 WP_007409356.1 family 1 glycosylhydrolase -
  V9W63_RS01795 (V9W63_01795) nin/comJ 334423..334821 (-) 399 WP_015239128.1 competence protein ComJ Regulator
  V9W63_RS01800 (V9W63_01800) nucA/comI 334842..335279 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V9W63_RS01805 (V9W63_01805) hxlB 335637..336194 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  V9W63_RS01810 (V9W63_01810) hxlA 336191..336826 (-) 636 WP_095352416.1 3-hexulose-6-phosphate synthase -
  V9W63_RS01815 (V9W63_01815) - 337058..337420 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=944278 V9W63_RS01800 WP_003156588.1 334842..335279(-) (nucA/comI) [Bacillus velezensis strain JJ334]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=944278 V9W63_RS01800 WP_003156588.1 334842..335279(-) (nucA/comI) [Bacillus velezensis strain JJ334]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641