Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8952_RS06335 Genome accession   NZ_AP028396
Coordinates   1229861..1230355 (+) Length   164 a.a.
NCBI ID   WP_002855991.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11505     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1224861..1235355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8952_RS06320 (B11505_12450) - 1226247..1227425 (-) 1179 WP_002856548.1 metal-dependent hydrolase -
  R8952_RS06325 (B11505_12460) gpsA 1227435..1228331 (-) 897 WP_079254192.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8952_RS06330 (B11505_12470) gatB 1228328..1229746 (-) 1419 WP_002856133.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8952_RS06335 (B11505_12480) luxS 1229861..1230355 (+) 495 WP_002855991.1 S-ribosylhomocysteine lyase Regulator
  R8952_RS06340 (B11505_12490) - 1230667..1231659 (+) 993 WP_002856389.1 isopenicillin N synthase family dioxygenase -
  R8952_RS06345 (B11505_12500) - 1231669..1232439 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8952_RS06350 (B11505_12510) metE 1232451..1234715 (+) 2265 WP_002887822.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18258.18 Da        Isoelectric Point: 5.9947

>NTDB_id=94425 R8952_RS06335 WP_002855991.1 1229861..1230355(+) (luxS) [Campylobacter jejuni strain BCH-11505]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=94425 R8952_RS06335 WP_002855991.1 1229861..1230355(+) (luxS) [Campylobacter jejuni strain BCH-11505]
ATGCCATTATTAGACAGCTTTAAAGTTGATCATACCAAAATGCCAGCGCCCGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCGTACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment