Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   V9W60_RS11220 Genome accession   NZ_CP146759
Coordinates   2207143..2207946 (-) Length   267 a.a.
NCBI ID   WP_338703606.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ61     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2202143..2212946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W60_RS11205 (V9W60_11205) - 2204360..2204596 (+) 237 WP_017357960.1 DUF2627 domain-containing protein -
  V9W60_RS11210 (V9W60_11210) - 2204630..2205367 (-) 738 WP_125590456.1 glycerophosphodiester phosphodiesterase -
  V9W60_RS11215 (V9W60_11215) - 2205594..2206694 (-) 1101 WP_019743381.1 Rap family tetratricopeptide repeat protein -
  V9W60_RS11220 (V9W60_11220) spo0A 2207143..2207946 (-) 804 WP_338703606.1 sporulation transcription factor Spo0A Regulator
  V9W60_RS11225 (V9W60_11225) spoIVB 2208230..2209507 (-) 1278 WP_041506972.1 SpoIVB peptidase -
  V9W60_RS11230 (V9W60_11230) recN 2209706..2211439 (-) 1734 WP_035390783.1 DNA repair protein RecN Machinery gene
  V9W60_RS11235 (V9W60_11235) argR 2211474..2211923 (-) 450 WP_007501163.1 transcriptional regulator ArgR -
  V9W60_RS11240 (V9W60_11240) - 2212085..2212939 (-) 855 WP_338703610.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29895.40 Da        Isoelectric Point: 6.3918

>NTDB_id=944242 V9W60_RS11220 WP_338703606.1 2207143..2207946(-) (spo0A) [Bacillus altitudinis strain JJ61]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVSHRSSSIQNSVLRSKPETKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=944242 V9W60_RS11220 WP_338703606.1 2207143..2207946(-) (spo0A) [Bacillus altitudinis strain JJ61]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAACTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGAAATGACCAAACAG
CCAAGTGTCATTATGCTGACGGCTTTCGGACAAGAAGACGTAACGAAAAAAGCAGTCGATTTGGGCGCATCCTATTTCAT
TTTGAAACCATTCGATATGGAAAACCTCGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCAGCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGCAGCAAACCTGAAACGAAACGTAAGAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTGCCAGCTCATATTAAAGGTTATTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGATAT
TGAACTACTCGGCAGTATTACAAAAGTATTGTACCCAGACATTGCAAAGAAATTTAACACGACAGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCTATTGAAGTGGCTTGGAGCAGAGGGAATATTGACTCCATTTCGTCACTCTTTGGTTACACAGTC
AGCATGTCAAAAGCCAAACCGACCAATTCCGAATTTATTGCCATGGTGGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888