Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   V9W60_RS10265 Genome accession   NZ_CP146759
Coordinates   2033654..2034289 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain JJ61     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2028654..2039289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W60_RS10225 (V9W60_10225) - 2028818..2029936 (+) 1119 WP_335352729.1 NADH-dependent flavin oxidoreductase -
  V9W60_RS10230 (V9W60_10230) - 2029986..2030492 (-) 507 WP_058336717.1 PTS glucose transporter subunit IIA -
  V9W60_RS10235 (V9W60_10235) - 2030661..2031080 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  V9W60_RS10240 (V9W60_10240) - 2031102..2031554 (-) 453 WP_017359729.1 YppG family protein -
  V9W60_RS10245 (V9W60_10245) - 2031663..2032043 (-) 381 WP_234710322.1 YppE family protein -
  V9W60_RS10250 (V9W60_10250) - 2032093..2032326 (-) 234 WP_224558417.1 DUF5446 family protein -
  V9W60_RS10255 (V9W60_10255) sspM 2032523..2032627 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  V9W60_RS10260 (V9W60_10260) - 2032651..2033607 (-) 957 WP_338703414.1 DUF2515 domain-containing protein -
  V9W60_RS10265 (V9W60_10265) recU 2033654..2034289 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  V9W60_RS10270 (V9W60_10270) - 2034309..2036981 (+) 2673 WP_035702944.1 PBP1A family penicillin-binding protein -
  V9W60_RS10275 (V9W60_10275) - 2037017..2037526 (-) 510 WP_338703417.1 YpoC family protein -
  V9W60_RS10280 (V9W60_10280) nth 2037523..2038185 (-) 663 WP_338703419.1 endonuclease III -
  V9W60_RS10285 (V9W60_10285) - 2038203..2038907 (-) 705 WP_338703421.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=944241 V9W60_RS10265 WP_017359733.1 2033654..2034289(+) (recU) [Bacillus altitudinis strain JJ61]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=944241 V9W60_RS10265 WP_017359733.1 2033654..2034289(+) (recU) [Bacillus altitudinis strain JJ61]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697