Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V9W60_RS08885 Genome accession   NZ_CP146759
Coordinates   1764028..1764408 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ61     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1759028..1769408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W60_RS08875 (V9W60_08875) - 1760751..1761659 (+) 909 WP_008343827.1 trypsin-like serine protease -
  V9W60_RS08880 (V9W60_08880) - 1761806..1763800 (+) 1995 WP_335364304.1 glycosyltransferase family 39 protein -
  V9W60_RS08885 (V9W60_08885) nucA/comI 1764028..1764408 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V9W60_RS08890 (V9W60_08890) - 1764552..1765400 (+) 849 WP_335364303.1 STAS domain-containing protein -
  V9W60_RS08895 (V9W60_08895) - 1765433..1765975 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  V9W60_RS08900 (V9W60_08900) - 1766272..1766715 (+) 444 WP_144678736.1 hypothetical protein -
  V9W60_RS08905 (V9W60_08905) lexA 1766763..1767383 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  V9W60_RS08910 (V9W60_08910) yneA 1767543..1767854 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  V9W60_RS08915 (V9W60_08915) - 1767872..1768519 (+) 648 WP_017359583.1 recombinase family protein -
  V9W60_RS08920 (V9W60_08920) - 1768589..1768819 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=944240 V9W60_RS08885 WP_224559893.1 1764028..1764408(+) (nucA/comI) [Bacillus altitudinis strain JJ61]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=944240 V9W60_RS08885 WP_224559893.1 1764028..1764408(+) (nucA/comI) [Bacillus altitudinis strain JJ61]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCAAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556