Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V9W60_RS01985 Genome accession   NZ_CP146759
Coordinates   371295..371723 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain JJ61     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 366295..376723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W60_RS01955 (V9W60_01955) - 366439..366768 (+) 330 WP_017366586.1 YckD family protein -
  V9W60_RS01960 (V9W60_01960) - 366815..367579 (-) 765 WP_058336345.1 MBL fold metallo-hydrolase -
  V9W60_RS01965 (V9W60_01965) - 367695..368114 (+) 420 WP_178896812.1 Lrp/AsnC family transcriptional regulator -
  V9W60_RS01970 (V9W60_01970) - 368139..368945 (+) 807 WP_024718957.1 AAC(3) family N-acetyltransferase -
  V9W60_RS01975 (V9W60_01975) comJ 368947..369333 (-) 387 WP_039166300.1 competence protein ComJ -
  V9W60_RS01980 (V9W60_01980) - 369471..371168 (-) 1698 WP_268432022.1 methyl-accepting chemotaxis protein -
  V9W60_RS01985 (V9W60_01985) nucA/comI 371295..371723 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V9W60_RS01990 (V9W60_01990) - 372092..374161 (+) 2070 WP_041508230.1 hydantoinase/oxoprolinase family protein -
  V9W60_RS01995 (V9W60_01995) - 374151..376136 (+) 1986 WP_338704627.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=944214 V9W60_RS01985 WP_007498233.1 371295..371723(-) (nucA/comI) [Bacillus altitudinis strain JJ61]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=944214 V9W60_RS01985 WP_007498233.1 371295..371723(-) (nucA/comI) [Bacillus altitudinis strain JJ61]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCAAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514