Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   V7A35_RS00670 Genome accession   NZ_CP146754
Coordinates   138748..139053 (+) Length   101 a.a.
NCBI ID   WP_040087209.1    Uniprot ID   -
Organism   Lactococcus petauri strain L1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 133748..144053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7A35_RS00650 (V7A35_00650) guaB 134858..136339 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  V7A35_RS00655 (V7A35_00655) rpsU 136465..136641 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  V7A35_RS00660 (V7A35_00660) comGA 136827..137771 (+) 945 WP_040086850.1 competence type IV pilus ATPase ComGA Machinery gene
  V7A35_RS00665 (V7A35_00665) comGB 137710..138729 (+) 1020 WP_256777882.1 competence type IV pilus assembly protein ComGB Machinery gene
  V7A35_RS00670 (V7A35_00670) comYC 138748..139053 (+) 306 WP_040087209.1 competence type IV pilus major pilin ComGC Machinery gene
  V7A35_RS00675 (V7A35_00675) comGD 139028..139444 (+) 417 WP_270517134.1 competence type IV pilus minor pilin ComGD Machinery gene
  V7A35_RS00680 (V7A35_00680) comGE 139476..139709 (+) 234 WP_019293009.1 competence type IV pilus minor pilin ComGE -
  V7A35_RS00685 (V7A35_00685) comGF 139696..140130 (+) 435 WP_230625259.1 competence type IV pilus minor pilin ComGF -
  V7A35_RS00690 (V7A35_00690) - 140362..141207 (+) 846 WP_270315874.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  V7A35_RS00695 (V7A35_00695) - 141278..142162 (-) 885 WP_040086846.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11373.35 Da        Isoelectric Point: 10.2213

>NTDB_id=944168 V7A35_RS00670 WP_040087209.1 138748..139053(+) (comYC) [Lactococcus petauri strain L1]
MKKKRLKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPNLGKLVSDGLITQK
QADSYNDYYTKNPNAKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=944168 V7A35_RS00670 WP_040087209.1 138748..139053(+) (comYC) [Lactococcus petauri strain L1]
ATGAAAAAAAAGAGACTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTGTTACTTTTATT
GTTTGTCCCAAATTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAGGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAACTTAGGGAAGCTTGTCTCCGACGGTTTAATTACGCAAAAA
CAAGCCGATAGCTACAATGATTATTATACCAAGAACCCTAATGCAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

64.356

100

0.644
  comYC Streptococcus mutans UA159

64.356

100

0.644
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comGC/cglC Streptococcus mitis SK321

63.636

98.02

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus pneumoniae D39

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae Rx1

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae R6

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae TIGR4

59.596

98.02

0.584
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

56.79

80.198

0.455
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396