Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   V7A40_RS09415 Genome accession   NZ_CP146750
Coordinates   1848645..1849688 (-) Length   347 a.a.
NCBI ID   WP_341784633.1    Uniprot ID   -
Organism   Lactococcus garvieae strain L2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1843645..1854688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7A40_RS09400 (V7A40_09400) rpsB 1843679..1844452 (-) 774 WP_014025489.1 30S ribosomal protein S2 -
  V7A40_RS09405 (V7A40_09405) - 1844725..1845765 (+) 1041 WP_014025490.1 lactonase family protein -
  V7A40_RS09410 (V7A40_09410) adhE 1845921..1848614 (+) 2694 WP_341785203.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  V7A40_RS09415 (V7A40_09415) sepM 1848645..1849688 (-) 1044 WP_341784633.1 SepM family pheromone-processing serine protease Regulator
  V7A40_RS09420 (V7A40_09420) coaD 1849678..1850175 (-) 498 WP_014025493.1 pantetheine-phosphate adenylyltransferase -
  V7A40_RS09425 (V7A40_09425) rsmD 1850165..1850704 (-) 540 WP_014025494.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V7A40_RS09430 (V7A40_09430) - 1850799..1852145 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37792.09 Da        Isoelectric Point: 6.9820

>NTDB_id=944162 V7A40_RS09415 WP_341784633.1 1848645..1849688(-) (sepM) [Lactococcus garvieae strain L2]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVQANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTDMIDYVSQQKVGDEVTIKYTRMDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKSSGTTNNYTAAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=944162 V7A40_RS09415 WP_341784633.1 1848645..1849688(-) (sepM) [Lactococcus garvieae strain L2]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTGTTCTTCCCCTTACCTTACTATATCGAGCAGCCCGGAGGAACCATTCCAGTTAATCAGATGGTCGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTGCAGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACTAATCAGCAATTTGACTTGGTCAA
CCAGTTCTATATGCAGACCGCGCAAAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATCACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGCCACACTTTCAAATCTTCAACTGATATGATTGACTATGTGTCTCAACAAAAAGTTGGAGATGAGGTGACCAT
CAAGTACACACGGATGGATGGCAGCAACCATGAAGCCACAGGAAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAGATCGATGCCGGAAGTATTGGCGGGCCAAGT
GCTGGGATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAAGATGGCAGCATCGGGCAAATAGGTGGTGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGTG
CAAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGTCTTCGGGTACAACAAATAACTATACAGCTGCGCTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGATCCAAGATGCACTAGACTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.991

100

0.49